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Protein Overview: SO3783

General Information:
Name(s) found: SO3783 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • ATP-dependent RNA helicase DEAD box family [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 535 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSALGLSA PLQKAVSEQG YDTPSPIQAQ AIPAVLTGKD VMAAAQTGTG KTAGFTLPLL  60
   61 ELLAKGHKAK SGQTRALVLT PTRELAAQVG ESVETYGKYL PLRSAVVFGG VPINPQINKL 120
  121 RHGVDVLVAT PGRLLDLVQQ NAVKFNQLEI LVLDEADRML DMGFIRDIKK ILALLPAKRQ 180
  181 NLMFSATFSD EIRELAKGLV NHPVEISVTP RNAAATTVKQ WICPVDKTQK SALLIQLIKQ 240
  241 ENWQQVLVFS RTKHGANRLA KSLIQAEISA AAIHGNKSQG ARTKALADFK SGEVRVLVAT 300
  301 DIAARGLDID QLPQVVNFDL PNVPEDYVHR IGRTGRAGAT GQAVSLVSSE EIKLLKDIER 360
  361 LINRVLERQE VEGFSPVHAL PETTLNPQGK DTKVKAVANH RKHRSAGKPA PRSGSGRDTQ 420
  421 GNRENSQRQN SASSRNSNEH NNTEAAVARS PKPKSKHPQR DGGTANSATA GNNAKAKPHS 480
  481 GAQQRSHAER SEKSNNDGRR QEQPKGRNPQ SAKPASNQPK QHSHRADNRP NSVKP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..384] PSI-BLAST 77.69897 No description for 2hxyA was found.
    2 View Details [385..535] PSI-BLAST 14.0 Nucleotide excision repair enzyme UvrB


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle