YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3783
Organism:	Shewanella oneidensis
Length:	535 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3783.

Description	E-value	Query Range	Subject Range
gi\|146294196, gi... - gi\|77814042\|ref\|ZP_00813311.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella p...	342.0	[0..1]	[535..12]
gi\|28808556, gi\|... - gi\|28900245\|ref\|NP_799900.1\| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633],... gi\|28808556 - gi\|28808556\|dbj\|BAC61733.1\| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633] gi\|153837460, gi... - gi\|153837460\|ref\|ZP_01990127.1\| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ...	340.0	[0..1]	[532..1]
gi\|116187260, gi... - gi\|75857780\|ref\|ZP_00765392.1\| COG0513: Superfamily II DNA and RNA helicases [Vibrio sp. Ex25], gi\|2...	339.0	[0..1]	[531..1]
gi\|82719006, gi\|... - gi\|82743623\|ref\|ZP_00906258.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	338.0	[0..1]	[531..12]
gi\|91224087, gi\|... - gi\|91224087\|ref\|ZP_01259350.1\| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01], gi\|9119...	334.0	[0..1]	[532..1]
gi\|37201363, gi\|... - gi\|37676819\|ref\|NP_937215.1\| DNA and RNA helicase [Vibrio vulnificus YJ016], gi\|37201363\|dbj\|BAC9718...	331.0	[0..1]	[512..1]
gi\|27358604, gi\|... - gi\|27367036\|ref\|NP_762563.1\| superfamily II DNA/RNA helicase [Vibrio vulnificus CMCP6], gi\|27358604\|...	331.0	[0..1]	[512..1]
gi\|113886148, gi... - gi\|82496959\|ref\|ZP_00882521.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	331.0	[0..1]	[534..1]
gi\|68543265, gi\|... - gi\|68543265\|ref\|ZP_00582976.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella b...	329.0	[0..1]	[510..12]
gi\|114046344, gi... - gi\|78690177\|ref\|ZP_00854828.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	326.0	[0..1]	[534..1]

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Predicted Domain #1

Region A:
Residues: [1-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSALGLSA PLQKAVSEQG YDTPSPIQAQ AIPAVLTGKD VMAAAQTGTG KTAGFTLPLL  60
   61 ELLAKGHKAK SGQTRALVLT PTRELAAQVG ESVETYGKYL PLRSAVVFGG VPINPQINKL 120
  121 RHGVDVLVAT PGRLLDLVQQ NAVKFNQLEI LVLDEADRML DMGFIRDIKK ILALLPAKRQ 180
  181 NLMFSATFSD EIRELAKGLV NHPVEISVTP RNAAATTVKQ WICPVDKTQK SALLIQLIKQ 240
  241 ENWQQVLVFS RTKHGANRLA KSLIQAEISA AAIHGNKSQG ARTKALADFK SGEVRVLVAT 300
  301 DIAARGLDID QLPQVVNFDL PNVPEDYVHR IGRTGRAGAT GQAVSLVSSE EIKLLKDIER 360
  361 LINRVLERQE VEGFSPVHAL PETT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.69897
Match:	2hxyA
Description:	No description for 2hxyA was found.

Predicted Domain #2

Region A:
Residues: [385-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNPQGKDTKV KAVANHRKHR SAGKPAPRSG SGRDTQGNRE NSQRQNSASS RNSNEHNNTE  60
   61 AAVARSPKPK SKHPQRDGGT ANSATAGNNA KAKPHSGAQQ RSHAERSEKS NNDGRRQEQP 120
  121 KGRNPQSAKP ASNQPKQHSH RADNRPNSVK P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1c4oA
Description:	Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits