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Protein Overview: SO1072

General Information:
Name(s) found: SO1072 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • chitin-binding protein putative [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 491 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHLTAFSQS TIPKFTIPKL TQLSLVTLAL TAGSTLVSQT ASAHGYVVSP ESRSYACKTG  60
   61 SNVNCGAVQW EPQSVEGASG FPESGPADGK IASAANGAFS PLDEQSPSRW SKRDIKSGWN 120
  121 DFSWQFTANH VTRNWRYYLT RQGWDQNQPL SRASFDLAPF CVIDGGMVQP PKLVTHNCYV 180
  181 PEDRSGYQVI LAVWEVGDTT NSFYNAIDVN FSSGAVVPGE WTDIGDINPS LDLKAGDKVM 240
  241 TRVFDANGEQ SAKQTQITIA DATQGAKQNW PFLLASAINA QQPQLKAGQK NAAGVISPVY 300
  301 GKNEIFAAPK SGLERVEVSF DIAPAPGNQL NVTSLADDYT IVDGAAQVSF DVSTNADMQV 360
  361 SAYLFSHDGT AAGYVTQAVN NTSASLVLDV VAPKAGHYHL QVKAEPKQGE VIQQNFDLFL 420
  421 KDQATAPDAD FIFPEGIKSY VAGTKVLQPK TGKVYQCKPW PYNGYCVQWS PTATGFEPGI 480
  481 GNSWTMAWTE L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..221] PSI-BLAST 50.69897 Crystal structure of the Serratia marcescens chitin-binding protein CBP21
    2 View Details [222..429] PSI-BLAST 10.69897 W-shaped trans interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography
    3 View Details [430..491] MSA 1.550996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chitin binding
    		•  1.26897809601882 bayes_pls_golite062009
  • binding
    		•  0.621971309710946 bayes_pls_golite062009
  • protein binding
    		•  0.0404451259966639 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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