YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1072
Organism:	Shewanella oneidensis
Length:	491 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1072.

Description	E-value	Query Range	Subject Range
gi\|82495148, gi\|... - gi\|82495148\|ref\|ZP_00880726.1\| chitin-binding protein, putative [Shewanella sp. MR-4], gi\|82406984\|g...	340.0	[0..1]	[491..1]
GBPA_SHEON - GlcNAc-binding protein A OS=Shewanella oneidensis (strain MR-1) GN=gbpA PE=3 SV=2 gi\|91206705 - gi\|91206705\|sp\|Q8EHY2.2\|GBPA_SHEON RecName: Full=GlcNAc-binding protein A; Flags: Precursor	339.0	[0..17]	[491..1]
gi\|78691346, gi\|... - gi\|78691346\|ref\|ZP_00855967.1\| chitin-binding protein, putative [Shewanella sp. MR-7], gi\|78509257\|g...	338.0	[0..1]	[491..1]
gi\|125996346, gi... - gi\|68541454\|ref\|ZP_00581198.1\| Chitin-binding, domain 3 [Shewanella baltica OS155], gi\|68520909\|gb\|E...	320.0	[0..20]	[491..10]
gi\|160876695, gi... - gi\|160876695\|ref\|YP_001556011.1\| N-acetylglucosamine-binding protein A [Shewanella baltica OS195], g...	319.0	[0..20]	[491..10]
GBPA_PHOPR - GlcNAc-binding protein A OS=Photobacterium profundum (strain SS9) GN=gbpA PE=3 SV=1 GBPA_PHOPR - GlcNAc-binding protein A OS=Photobacterium profundum GN=gbpA PE=3 SV=1	314.0	[0..29]	[491..10]
gi\|69944133, gi\|... - gi\|91792390\|ref\|YP_562041.1\| N-acetylglucosamine-binding protein A [Shewanella denitrificans OS217],...	313.0	[0..20]	[491..10]
GBPA_VIBVY - GlcNAc-binding protein A OS=Vibrio vulnificus (strain YJ016) GN=gbpA PE=3 SV=1	312.0	[0..17]	[491..1]
GBPA_VIBVU - GlcNAc-binding protein A OS=Vibrio vulnificus (strain CMCP6) GN=gbpA PE=3 SV=1 GBPA_VIBVU - GlcNAc-binding protein A OS=Vibrio vulnificus GN=gbpA PE=3 SV=1	309.0	[0..17]	[491..1]
gi\|116191057, gi... - gi\|75828868\|ref\|ZP_00758201.1\| COG3397: Uncharacterized protein conserved in bacteria [Vibrio choler...	308.0	[0..17]	[490..10]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHLTAFSQS TIPKFTIPKL TQLSLVTLAL TAGSTLVSQT ASAHGYVVSP ESRSYACKTG  60
   61 SNVNCGAVQW EPQSVEGASG FPESGPADGK IASAANGAFS PLDEQSPSRW SKRDIKSGWN 120
  121 DFSWQFTANH VTRNWRYYLT RQGWDQNQPL SRASFDLAPF CVIDGGMVQP PKLVTHNCYV 180
  181 PEDRSGYQVI LAVWEVGDTT NSFYNAIDVN FSSGAVVPGE W

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2bemA
Description:	Crystal structure of the Serratia marcescens chitin-binding protein CBP21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chitin binding	1.26897809601882	bayes_pls_golite062009
binding	0.621971309710946	bayes_pls_golite062009
protein binding	0.0404451259966639	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [222-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDIGDINPSL DLKAGDKVMT RVFDANGEQS AKQTQITIAD ATQGAKQNWP FLLASAINAQ  60
   61 QPQLKAGQKN AAGVISPVYG KNEIFAAPKS GLERVEVSFD IAPAPGNQLN VTSLADDYTI 120
  121 VDGAAQVSFD VSTNADMQVS AYLFSHDGTA AGYVTQAVNN TSASLVLDVV APKAGHYHLQ 180
  181 VKAEPKQGEV IQQNFDLFLK DQATAPDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	1q55A
Description:	W-shaped trans interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [430-491]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFIFPEGIKS YVAGTKVLQP KTGKVYQCKP WPYNGYCVQW SPTATGFEPG IGNSWTMAWT  60
   61 EL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: