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Protein Overview: RPC9_CAVPO

General Information:
Name(s) found: RPC9_CAVPO [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1 [Swiss-Prot]
    • Organism: Cavia porcellus
    Length: 146 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKDANSAL LSNYEVFQLL TDLKDQRRES GKMKHSAGQQ NLNTITYETL KYLSKTPCRH  60
   61 QSPEIVREFL TAMKSHKLTK AEKLQLLNHR PMTAVEIQLM VEETEERFTE EEQIEALLHT 120
  121 VTHILPAEPE VEQMASTEAM EEEGPA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..146] PSI-BLAST 27.30103 Subunits Rpb4 and Rpb7 of human RNA polymerase II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleotidyltransferase activity
    		•  5.28965471523529 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.88827529846212 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  2.92140702040469 bayes_pls_golite062009
  • RNA polymerase activity
    		•  2.92140702040469 bayes_pls_golite062009
  • transferase activity
    		•  2.69774582611316 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.87390721454777 bayes_pls_golite062009
  • binding
    		•  1.4918873731138 bayes_pls_golite062009
  • catalytic activity
    		•  1.17990683373825 bayes_pls_golite062009
  • protein binding
    		•  0.497114544861103 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle