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Protein Overview: CCDB3_ECOLX, CCD...

General Information:
Name(s) found: CCDB4_ECOLX [Swiss-Prot]
CCDB3_ECOLX [Swiss-Prot]
Description(s) found:
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  • pir||T00238 cytotoxic protein letB - Escherichia coli plasmids pO157 and F [NCBI NR]
  • gi|67464194|pdb|1X75|D Chain D, Ccdb:gyra14 Complex [NCBI NR]
  • gi|67464193|pdb|1X75|C Chain C, Ccdb:gyra14 Complex [NCBI NR]
  • gi|50401841|sp|P62554.1|CCDB_ECOLI RecName: Full=Cytotoxic protein ccdB; AltName: Full=Protein letB; AltName: Full=Protein G; AltName: Full=LynB [NCBI NR]
  • gi|41368|emb|CAA25244.1| unnamed protein product [Escherichia coli] [NCBI NR]
  • gi|3891773|pdb|4VUB| Chain , Ccdb, A Topoisomerase Poison From Escherichia Coli [NCBI NR]
  • gi|3402128|pdb|1VUB|D Chain D, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3402127|pdb|1VUB|C Chain C, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3402126|pdb|1VUB|B Chain B, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3402125|pdb|1VUB|A Chain A, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3337026|dbj|BAA31785.1| cytotoxic protein LetB [Escherichia coli] [NCBI NR]
  • gi|3318780|pdb|3VUB| Chain , Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318777|pdb|2VUB|H Chain H, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318776|pdb|2VUB|G Chain G, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318775|pdb|2VUB|F Chain F, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318774|pdb|2VUB|E Chain E, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318773|pdb|2VUB|D Chain D, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318772|pdb|2VUB|C Chain C, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318771|pdb|2VUB|B Chain B, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|3318770|pdb|2VUB|A Chain A, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • gi|228861733|ref|NP_976305.2| plasmid maintenance protein CcdB [Escherichia coli] [NCBI NR]
  • gi|228861732|ref|NP_976301.2| plasmid maintenance protein CcdB [Escherichia coli] [NCBI NR]
  • gi|157837009|pdb|4VUB|A Chain A, Ccdb, A Topoisomerase Poison From Escherichia Coli [NCBI NR]
  • gi|157836906|pdb|3VUB|A Chain A, Ccdb, A Topoisomerase Poison From E. Coli [NCBI NR]
  • Cytotoxic protein ccdB (Protein letB) (Protein G) (LynB) - Escherichia coli [Swiss-Prot]
  • Toxin CcdB OS=Escherichia coli GN=ccdB PE=3 SV=2 [Swiss-Prot]
  • DNA gyrase inhibitor [Cloning vector pUC18-mini-Tn7T-Tp-Gateway]gi|54043006|gb|AAV28494.1| DNA gyrase inhibitor [Cloning vector pUC18-mini-Tn7T-Gm-Gateway]gi|8918866|dbj|BAA97913.1| ccdB(letD) [Plasmid F]gi|21552740|gb|AAM62303.1| CcdB [Binary vector p [nrdb_11152004_Chlamydomonas]
  • Chain F, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain E, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain H, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain , Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain A, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain C, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain , Ccdb, A Topoisomerase Poison From Escherichia Coli [nr-271106-contam.fasta]
  • Chain B, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain D, Ccdb:gyra14 Complex [nr-271106-contam.fasta]
  • Chain G, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • unnamed protein product [Escherichia coli] [nr-271106-contam.fasta]
  • Chain D, Ccdb, A Topoisomerase Poison From E. Coli [nr-271106-contam.fasta]
  • Chain C, Ccdb:gyra14 Complex [nr-271106-contam.fasta]
  • Toxin CcdB OS=Escherichia coli (strain K12) GN=ccdB PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 101 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFKVYTYKR ESRYRLFVDV QSDIIDTPGR RMVIPLASAR LLSDKVSREL YPVVHIGDES  60
   61 WRMMTTDMAS VPVSVIGEEV ADLSHRENDI KNAINLMFWG I

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. CCDB3_ECOLX, CCD... gi|134105085, gi... gi|189095939, gi...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] PSI-BLAST 35.221849 CcdB


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle