YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDB3_ECOLX, CCD...
Organism:	Escherichia coli
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDB3_ECOLX, CCD....

Description	E-value	Query Range	Subject Range
gi\|45861227 - gi\|45861227\|gb\|AAS78491.1\| LacZ alpha & ccdB lethal fusion protein [Cloning vector pZero++ Kan] gi\|45861223 - gi\|45861223\|gb\|AAS78488.1\| LacZ alpha & ccdB lethal fusion protein [Cloning vector pZero++ Amp]	146.0	[0..2]	[101..138]
gi\|2664255 - gi\|2664255\|emb\|CAA67127.1\| ccdB [synthetic construct]	145.0	[0..2]	[101..124]
gi\|2950220 - gi\|2950220\|emb\|CAA71575.1\| fused-ccdB [Cloning vector pZeRO-2T]	145.0	[0..2]	[101..118]
gi\|91206302, gi\|... - gi\|91206302\|ref\|YP_538656.1\| plasmid maintenance protein CcdB [Escherichia coli UTI89], gi\|91075753\|... gi\|10955422, gi\|... - gi\|6009448\|dbj\|BAA84907.1\| CcdB [Escherichia coli], gi\|10955422\|ref\|NP_053134.1\| plasmid maintenance...	145.0	[0..1]	[101..8]
gi\|3892167 - gi\|3892167\|gb\|AAC78281.1\| CcdB protein; CcdB fusion protein [Cloning vector pKILHIS-2]	144.0	[0..2]	[101..87]
gi\|3892163 - gi\|3892163\|gb\|AAC78278.1\| CcdB protein [Cloning vector pKILHIS-1]	143.0	[0..2]	[101..87]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFKVYTYKR ESRYRLFVDV QSDIIDTPGR RMVIPLASAR LLSDKVSREL YPVVHIGDES  60
   61 WRMMTTDMAS VPVSVIGEEV ADLSHRENDI KNAINLMFWG I

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Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	1vubA
Description:	CcdB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits