YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: BXD1_ORYSA, BXDC...

General Information:
Name(s) found: BXDC1_ORYSA [Swiss-Prot]
BXD1_ORYSA [Swiss-Prot]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • Brix domain-containing protein 1 homolog - Oryza sativa (Rice) [Swiss-Prot]
  • (Q9AWM9) Brix domain containing protein 1 homolog [Swiss-Prot]
    • Organism: Oryza sativa
    Length: 310 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAIRVPRS QRAKRELLKH APKLVETGKK TLILHGTKTS AVLNSVLADL FHLKRDNAVK  60
   61 YSKKNDNIRP FESGGETSLE FFSLKTDCSL IVYGSHSKKR PNNLVLGRTY DHHIYDLVEV 120
  121 GVENYKSIES YVYDKKLAPK LGSKPFFAFI GEHFESVEEL KHLKEVLLDL FKGEVVENLN 180
  181 LAGVDRVFVC TAISPTTVYM MHCALRLKRS GTSIPRIELV EVGPSMDLVV RRHRYPVESL 240
  241 KKEAMKTADH AKKMKNVTKD PVHGKLGKVY IPDQQIAKMS LSNDVKGLKR ERREAKKNKD 300
  301 HSKKQKINPE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] PSI-BLAST 6.522879 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    2 View Details [131..215] FFAS03 1.27 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    3 View Details [216..310] MSA 1.147997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.87211694771248 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.87184649959884 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.87184649959884 bayes_pls_golite062009
  • ligase activity
    		•  2.64230127203047 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.78917266819015 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.665778090365515 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle