Protein Overview: lgc-52

General Information:
Name(s) found:	lgc-52 / CE36678 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00013517 locus:lgc-52 status:Partially_confirmed UniProt:Q9NA62 protein_id:CAB60529.2 [WormBase] gi\|71999575\|ref\|NP_502839.2\| Ligand-Gated ion Channel family member (lgc-52) [Caenorhabditis elegans] [NCBI NR] gi\|50470603\|emb\|CAB60529.2\| Hypothetical protein Y73F8A.2 [Caenorhabditis elegans] [NCBI NR] Hypothetical protein Y73F8A.2 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas] CE36678 WBGene00013517 neurotransmitter-gated ion-channel protein status:Predicted TR:Q9NA62 protein_id:CAB60529.2 [wormpep150.fasta] 36678 WBGene00013517 neurotransmitter-gated ion-channel protein status:Predicted TR:Q9NA62 protein_id:CAB60529.2 [wormpep130-phg-ecoli-orf-rand.fasta] CE36678 WBGene00013517 locus:lgc-52 neurotransmitter-gated ion-channel protein status:Predicted UniProt:Q9NA62_CAEEL protein_id:CAB60529.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE36678 WBGene00013517 locus:lgc-52 neurotransmitter-gated ion-channel protein status:Predicted UniProt:Q9NA62_CAEEL protein_id:CAB60529.2\| [wormORF-contam.fasta] Y73F8A.2 [Caenorhabditis elegans] [nr-271106-contam.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE36678 WBGene00013517 locus:lgc-52 neurotransmitter-gated ion-channel protein status:Predicted UniProt:Q9NA62 protein_id:CAB60529.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] CE36678 WBGene00013517 locus:lgc-52 neurotransmitter-gated ion-channel protein status:Partially_confirmed UniProt:Q9NA62 protein_id:CAB60529.2 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
Organism:	Caenorhabditis elegans
Length:	434 amino acids
Gene Ontology:
Cellular Component:	postsynaptic membrane [IEA] membrane [IEA] integral to membrane [IEA]
Biological Process:	ion transport [IEA] transport [IEA]
Molecular Function:	neurotransmitter receptor activity [IEA] extracellular ligand-gated ion channel activity [IEA] phosphopantetheine binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPPPPPGN GEFHVIIALF IETILMSARI HDVTYQHIED FTCDDIGLSS LSGAKATDLA  60
   61 RILMTNYSRN ALPEPAPVKV EVEITIQDIS DISAITGTFT IDYWISAIWN DKRLAFSHLD 120
  121 PCRKNLSLDH DMEPKLWSPN VCIVNSKSTK VHDSPKPNIL LMIFPNGTIW LNYRIRSEAP 180
  181 CQMNLRNFPL DSIRCSLVFE SYSYNAADVE LQWLEWSPVS TVRNDYNLPD FRMTNITYGS 240
  241 VTEAYTAGMW HRLSVSIHFE RLYGFYILQM YLPTYISVFI SWIAFWMDTK ALPARITLSV 300
  301 SSLMALTFQF GNIVKSLPKA SYVKAIDIWM FSCVGFIFFS LIELAIVAYN DKMHDQRLRE 360
  361 VRCSVGNLNS NGIGQYNSTT RRSFVELSAR RAKGSELGAS IDRVASMLFP TMFALFNLVY 420
  421 WAYYLTTSMN PVYT

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..434]	PSI-BLAST	68.522879	Refined structure of the nicotinic acetylcholine receptor at 4A resolution.

Protein Overview: lgc-52

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: