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Protein Overview: sgca-1

General Information:
Name(s) found: sgca-1 / CE37119 [WormBase]
Description(s) found:
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  • WBGene00019227 locus:sgca-1 status:Confirmed UniProt:H2L0C3 protein_id:CCD72418.1 [WormBase]
  • gi|71992628|ref|NP_509141.2| H22K11.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|51011303|gb|AAK39242.3| Hypothetical protein H22K11.4a [Caenorhabditis elegans] [NCBI NR]
  • gi|115533474|ref|NP_001041260.1| SarcoGlyCan Alpha homolog family member (sgca-1) [Caenorhabditis elegans] [NCBI NR]
  • Hypothetical protein H22K11.4 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE37119 WBGene00019227 status:Confirmed TR:O76633 protein_id:AAK39242.3 [wormpep150.fasta]
  • 37119 WBGene00019227 status:Partially_confirmed TR:O76633 protein_id:AAK39242.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • 37119 WBGene00019227 status:Confirmed TR:O76633 protein_id:AAK39242.3 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE37119 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:O76633_CAEEL protein_id:AAK39242.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE37119 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:O76633_CAEEL protein_id:AAK39242.3| [wormORF-contam.fasta]
  • H22K11.4a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein H22K11.4a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE37119 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:O76633 protein_id:AAK39242.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE37119 WBGene00019227 locus:sgca-1 status:Confirmed UniProt:H2L0C3 protein_id:CCD72418.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • SarcoGlyCan Alpha homolog OS=Caenorhabditis elegans GN=sgca-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: sarcoglycan complex [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: protein binding [IEALink to PubMed article]
    calcium ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRLLDFSI FSILLLFRTS KSFKAPTHVT ATKGKFFVHT LHSAHFFPST VKVKWEATLN  60
   61 KKPALPNWLR LLPSRHPEIA YLIGTPVTNV QHVTLHVIAK RLDNFDIQQR MVVINLVEDS 120
  121 LYQGNTQQVF ELPINGLDVE DLVSNRDRKI SQLENSLRNT FRGRNVNPYI AGVRSRYIIP 180
  181 RGKEHIFKNS FGTMVYVGTQ QKFYPGTMSI VHNLQTMPEF CSNPSSVVMN KYFAPTFPVD 240
  241 WCNVAVRNIS SLEGEGIDEL IKDEQEEKLT KANPDQNLNE KPEQPPRELY GYSEHGFSIV 300
  301 LFAIILGVSI LFVFALVLIF FGSREGQKWR DDKTSGETLG EFISIRDNQK KLRELSLQRQ 360
  361 LLSMGPDTNS TAPSGIHSYL QSRSRAPSTS IARFSKSASR LNDKEDTIEL LPSVDHVPVG 420
  421 KQTVAEAAKQ CGSSLHLYRN PLSNESDEQD TESSDEDN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] MSA 2.019978 View MSA. No confident structure predictions are available.
    2 View Details [103..185] MSA 1.02199 View MSA. No confident structure predictions are available.
    3 View Details [186..261] deduced N/A No confident structure predictions are available.
    4 View Details [262..366] MSA 2.019974 View MSA. No confident structure predictions are available.
    5 View Details [367..458] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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