YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sgca-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRLLDFSI FSILLLFRTS KSFKAPTHVT ATKGKFFVHT LHSAHFFPST VKVKWEATLN  60
   61 KKPALPNWLR LLPSRHPEIA YLIGTPVTNV QHVTLHVIAK RLDNFDIQQR MVVINLVEDS 120
  121 LYQGNTQQVF ELPINGLDVE DLVSNRDRKI SQLENSLRNT FRGRNVNPYI AGVRSRYIIP 180
  181 RGKEHIFKNS FGTMVYVGTQ QKFYPGTMSI VHNLQTMPEF CSNPSSVVMN KYFAPTFPVD 240
  241 WCNVAVRNIS SLEGEGIDEL IKDEQEEKLT KANPDQNLNE KPEQPPRELY GYSEHGFSIV 300
  301 LFAIILGVSI LFVFALVLIF FGSREGQKWR DDKTSGETLG EFISIRDNQK KLRELSLQRQ 360
  361 LLSMGPDTNS TAPSGIHSYL QSRSRAPSTS IARFSKSASR LNDKEDTIEL LPSVDHVPVG 420
  421 KQTVAEAAKQ CGSSLHLYRN PLSNESDEQD TESSDEDN

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	298	0.98
Transmembrane Helix	299	321	0.95
Cytoplasmic	322	458	0.98