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Protein Overview: sdpn-1

General Information:
Name(s) found: sdpn-1 / CE37111 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00018467 locus:sdpn-1 status:Confirmed UniProt:Q6AHQ8 protein_id:CCD66643.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 495 amino acids

    Gene Ontology:
    Cellular Component: recycling endosome [IDA]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCLPCMAAD VLAPGFWEVG SYKHNVKRFK DGVEQLDDYC KMSRERAEIE AKYSKMLSQH  60
   61 AEKWRAHVDR TVSAGSVKTV WNELIGEATA LSRVHNSLKD CLIDDIVNET TTYRKNSLHT 120
  121 SVFKGPKEIR EIEDHFEKAQ KPWKKLVDKM EDKRGKYYNV CRQEKSALVN LQNCQTDTSV 180
  181 SPDAATKFRE RHEKLKEEVQ RTKVDYQKTL TNLNEYKNVY MEAMAHVFKM CQEKEMDRSQ 240
  241 FLIGIVQKTQ RHYANIIRNS QMSGLHQQLE QSIRSADSEA VKRDLAQWSS VNGVDAFSEW 300
  301 PSFVEYSPEI RNIAARGGST KDAGGVILTR QINRSEDIPS THSNTLPSVA VNTASSHEDV 360
  361 GKSSPKSSSE SDTSTFDSRK HNSTANKYKN QPQNTTQIQP PPVGWHPSDG PDSPPLSTET 420
  421 PDSAKYGDFE EFTTSKPAVV LYDYAPAEGD EIALRKGEMI EVLTEPDSLG WCTGRVSGNV 480
  481 GLFPASYVQC QGEKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..305] PSI-BLAST 27.522879 No description for 2eflA was found.
    2 View Details [306..367] deduced N/A No confident structure predictions are available.
    3 View Details [368..495] PSI-BLAST 12.69897 53BP2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.43584893484993 bayes_pls_golite062009
  • protein binding
    		•  1.87308005875135 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.02414077739262 bayes_pls_golite062009
  • identical protein binding
    		•  0.442892596927351 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle