| Protein: | sdpn-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 495 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdpn-1.
| Description | E-value | Query Range |
Subject Range |
|
|
233.0 | [0..5] | [491..7] |
|
Region A: Residues: [1-305] |
1 11 21 31 41 51
| | | | | |
1 MSCLPCMAAD VLAPGFWEVG SYKHNVKRFK DGVEQLDDYC KMSRERAEIE AKYSKMLSQH 60
61 AEKWRAHVDR TVSAGSVKTV WNELIGEATA LSRVHNSLKD CLIDDIVNET TTYRKNSLHT 120
121 SVFKGPKEIR EIEDHFEKAQ KPWKKLVDKM EDKRGKYYNV CRQEKSALVN LQNCQTDTSV 180
181 SPDAATKFRE RHEKLKEEVQ RTKVDYQKTL TNLNEYKNVY MEAMAHVFKM CQEKEMDRSQ 240
241 FLIGIVQKTQ RHYANIIRNS QMSGLHQQLE QSIRSADSEA VKRDLAQWSS VNGVDAFSEW 300
301 PSFVE
|
| Detection Method: |  |
| Confidence: | 27.522879 |
| Match: | 2eflA |
| Description: | No description for 2eflA was found. |
| Term | Confidence | Notes |
| binding | 2.43584893484993 | bayes_pls_golite062009 |
| protein binding | 1.87308005875135 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.02414077739262 | bayes_pls_golite062009 |
| identical protein binding | 0.442892596927351 | bayes_pls_golite062009 |
|
Region A: Residues: [306-367] |
1 11 21 31 41 51
| | | | | |
1 YSPEIRNIAA RGGSTKDAGG VILTRQINRS EDIPSTHSNT LPSVAVNTAS SHEDVGKSSP 60
61 KS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [368-495] |
1 11 21 31 41 51
| | | | | |
1 SSESDTSTFD SRKHNSTANK YKNQPQNTTQ IQPPPVGWHP SDGPDSPPLS TETPDSAKYG 60
61 DFEEFTTSKP AVVLYDYAPA EGDEIALRKG EMIEVLTEPD SLGWCTGRVS GNVGLFPASY 120
121 VQCQGEKS
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 1ycsB |
| Description: | 53BP2 |
Matching Structure (courtesy of the PDB): |
|
