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Protein Overview: lgc-36

General Information:
Name(s) found: lgc-36 / CE36640 [WormBase]
Description(s) found:
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  • WBGene00008551 locus:lgc-36 status:Partially_confirmed UniProt:Q6BET0 protein_id:CAH04701.1 [WormBase]
  • gi|71988451|ref|NP_001023766.1| Ligand-Gated ion Channel family member (lgc-36) [Caenorhabditis elegans] [NCBI NR]
  • gi|50507791|emb|CAH04701.1| C. elegans protein F07B10.5, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Hypothetical protein F07B10.5 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE36640 WBGene00008551 GABA-gated chloride channel status:Predicted TR:Q6BET0 protein_id:CAH04701.1 [wormpep150.fasta]
  • 36640 WBGene00008551 GABA-gated chloride channel status:Predicted protein_id:CAH04701.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • 36640 WBGene00008551 GABA-gated chloride channel status:Predicted TR:Q6BET0 protein_id:CAH04701.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE36640 WBGene00008551 locus:lgc-36 GABA-gated chloride channel status:Predicted UniProt:Q6BET0_CAEEL protein_id:CAH04701.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE36640 WBGene00008551 locus:lgc-36 GABA-gated chloride channel status:Predicted UniProt:Q6BET0_CAEEL protein_id:CAH04701.1| [wormORF-contam.fasta]
  • F07B10.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE36640 WBGene00008551 locus:lgc-36 GABA-gated chloride channel status:Partially_confirmed UniProt:Q6BET0 protein_id:CAH04701.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE36640 WBGene00008551 locus:lgc-36 status:Partially_confirmed UniProt:Q6BET0 protein_id:CAH04701.1 [wormpep246-ecoli-contam.fasta]
  • Ligand-Gated ion Channel OS=Caenorhabditis elegans GN=lgc-36 PE=3 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 536 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHRISKFTV SLIIFFISTI ILSVCGNELK FTIENVKFRS PGSFRIKRTV HPKREKGVAQ  60
   61 NVTHLLNNVL KNYDQHFRPG FNSGKPTKVY IDLFIRTMGP VSDLFNTYSF NCYFRQKWTD 120
  121 DRLHFNNSGI GFRQLSLSMA MLDKIWKPDT YFWNGAGSYV HGITTSNRLV RLEPDGTILY 180
  181 SSRITVKAKC QMDMSRYPLD KQACRLVIGS YAYSSDEVQY KWRIMGDDNG VKIDYESIAD 240
  241 LPQFSLSGFK VYKPANITRD KEYSALEVRF YFDRHFGYFL MNFYVPCALV VLLCWVAFFT 300
  301 KREATAERIG IGITNVLTIV LISMDSKSDS PKVDSPTALE VFIWICYLTH LICMVEFTVV 360
  361 HYHTKYNTGD PEIQEVERER LRQIIKQIPK NTNNRATEPT FRRRNAALPV SIARPLPNKT 420
  421 KRFMSVRQPK KSEQTESIQL MRKISNMEST THNEVESSLN LESIRQENVG WRLYYWMIDH 480
  481 NIKTDPFGVA QNSTSRIDKI SVIVAPLIFI LTIALYYDFY VNRVFKFNFD NDFGTM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..387] PSI-BLAST 71.221849 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    2 View Details [388..536] PSI-BLAST 36.154902 Acetylcholine receptor protein, beta chain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle