| Protein: | lgc-36 |
| Organism: | Caenorhabditis elegans |
| Length: | 536 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-36.
| Description | E-value | Query Range |
Subject Range |
|
|
369.0 | [0..59] | [526..102] |
|
Region A: Residues: [1-387] |
1 11 21 31 41 51
| | | | | |
1 MLHRISKFTV SLIIFFISTI ILSVCGNELK FTIENVKFRS PGSFRIKRTV HPKREKGVAQ 60
61 NVTHLLNNVL KNYDQHFRPG FNSGKPTKVY IDLFIRTMGP VSDLFNTYSF NCYFRQKWTD 120
121 DRLHFNNSGI GFRQLSLSMA MLDKIWKPDT YFWNGAGSYV HGITTSNRLV RLEPDGTILY 180
181 SSRITVKAKC QMDMSRYPLD KQACRLVIGS YAYSSDEVQY KWRIMGDDNG VKIDYESIAD 240
241 LPQFSLSGFK VYKPANITRD KEYSALEVRF YFDRHFGYFL MNFYVPCALV VLLCWVAFFT 300
301 KREATAERIG IGITNVLTIV LISMDSKSDS PKVDSPTALE VFIWICYLTH LICMVEFTVV 360
361 HYHTKYNTGD PEIQEVERER LRQIIKQ
|
| Detection Method: |  |
| Confidence: | 71.221849 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [388-536] |
1 11 21 31 41 51
| | | | | |
1 IPKNTNNRAT EPTFRRRNAA LPVSIARPLP NKTKRFMSVR QPKKSEQTES IQLMRKISNM 60
61 ESTTHNEVES SLNLESIRQE NVGWRLYYWM IDHNIKTDPF GVAQNSTSRI DKISVIVAPL 120
121 IFILTIALYY DFYVNRVFKF NFDNDFGTM
|
| Detection Method: | |
| Confidence: | 36.154902 |
| Match: | 1oedB |
| Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
|
