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Protein Overview: pqn-13

General Information:
Name(s) found: pqn-13 / CE36269 [WormBase]
Description(s) found:
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  • WBGene00004104 locus:pqn-13 status:Partially_confirmed UniProt:Q17982 protein_id:CCD64502.1 [WormBase]
  • gi|71984090|ref|NP_504494.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-13) [Caenorhabditis elegans] [NCBI NR]
  • gi|39752863|gb|AAA96110.3| Prion-like-(q/n-rich)-domain-bearing protein protein 13, isoform a [Caenorhabditis elegans] [NCBI NR]
  • Prion-like-(q/n-rich)-domain-bearing protein protein 13 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE36269 WBGene00004104 locus:pqn-13 status:Partially_confirmed TR:Q17982 protein_id:AAA96110.3 [wormpep150.fasta]
  • 36269 WBGene00004104 locus:pqn-13 status:Partially_confirmed TR:Q17982 protein_id:AAA96110.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE36269 WBGene00004104 locus:pqn-13 status:Partially_confirmed UniProt:Q17982_CAEEL protein_id:AAA96110.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE36269 WBGene00004104 locus:pqn-13 status:Partially_confirmed UniProt:Q17982_CAEEL protein_id:AAA96110.3| [wormORF-contam.fasta]
  • Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-13) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE36269 WBGene00004104 locus:pqn-13 status:Partially_confirmed UniProt:Q17982 protein_id:AAA96110.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE36269 WBGene00004104 locus:pqn-13 status:Partially_confirmed UniProt:Q17982 protein_id:CCD64502.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of H2KYR7, Prion-like-(Q/N-rich)-domain-bearing protein OS=Caenorhabditis elegans GN=pqn-13 PE=4 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 572 amino acids

    Gene Ontology:
    Cellular Component: extracellular region [IEALink to PubMed article]
    Biological Process: hormone-mediated signaling pathway [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRWQPLLFA LLVAFAYAAD GTTKSEASST TVATSESTTE STKTTTASAI KETVKEEVKE  60
   61 KEGPETRNET AAVSRAKRQC CFAAQNSCCP QQVQSQCNCA ALQIQVQQCD CANMLQTQCG 120
  121 CPSISSPSCD CGTLQNQYSS CGCGSLSYQV SCNQCQQQSQ PQIIVVQQPQ QQQCSSQCMP 180
  181 ACLPSCVQSS CAPACQPMCS SSCVQQQQQQ IIVVQQPQQQ CASSCMPSCQ PSCVQQACAP 240
  241 ACQPMCSSQC VEQQQAQIVV VQQPQQQCTS SCMPACQSSC VQQACAPACQ PKCSSQCVEQ 300
  301 QQAQIVVVQP PTSSSNNCAS SCMPQCTPQC VQQQTICAAA CQPSCQSSCS SNAQCVQACL 360
  361 PSCESSCVQQ QQPSVVVVQD SQSSCPSACQ PSCSQQCIQA QNLCQSACQP SCQSSCGSNT 420
  421 QCVQACIPSC QQTCGQQAQP VIVVQQPQQN NCVQACQPQC QQTCGSNVQC VSACQNSCQQ 480
  481 SCGNQQQQQV IVVQSSPMCG QACQAPPVLQ CVPQCQPSCQ PSCMQQYQFI QAPAITMCQQ 540
  541 SGGSCGCGSG YSQCMQGVCC LRKRHRLAKN KL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] deduced N/A No confident structure predictions are available.
    2 View Details [88..475] PSI-BLAST 4.522879 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    3 View Details [476..572] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle