| Protein: | pqn-13 |
| Organism: | Caenorhabditis elegans |
| Length: | 572 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pqn-13.
| Description | E-value | Query Range |
Subject Range |
|
|
245.0 | [0..6] | [571..173] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MVRWQPLLFA LLVAFAYAAD GTTKSEASST TVATSESTTE STKTTTASAI KETVKEEVKE 60
61 KEGPETRNET AAVSRAKRQC CFAAQNS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [88-475] |
1 11 21 31 41 51
| | | | | |
1 CCPQQVQSQC NCAALQIQVQ QCDCANMLQT QCGCPSISSP SCDCGTLQNQ YSSCGCGSLS 60
61 YQVSCNQCQQ QSQPQIIVVQ QPQQQQCSSQ CMPACLPSCV QSSCAPACQP MCSSSCVQQQ 120
121 QQQIIVVQQP QQQCASSCMP SCQPSCVQQA CAPACQPMCS SQCVEQQQAQ IVVVQQPQQQ 180
181 CTSSCMPACQ SSCVQQACAP ACQPKCSSQC VEQQQAQIVV VQPPTSSSNN CASSCMPQCT 240
241 PQCVQQQTIC AAACQPSCQS SCSSNAQCVQ ACLPSCESSC VQQQQPSVVV VQDSQSSCPS 300
301 ACQPSCSQQC IQAQNLCQSA CQPSCQSSCG SNTQCVQACI PSCQQTCGQQ AQPVIVVQQP 360
361 QQNNCVQACQ PQCQQTCGSN VQCVSACQ
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
|
Region A: Residues: [476-572] |
1 11 21 31 41 51
| | | | | |
1 NSCQQSCGNQ QQQQVIVVQS SPMCGQACQA PPVLQCVPQC QPSCQPSCMQ QYQFIQAPAI 60
61 TMCQQSGGSC GCGSGYSQCM QGVCCLRKRH RLAKNKL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
