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Protein Overview: LDB7

General Information:
Name(s) found: LDB7 / YBL006C [SGD]
Description(s) found:
Found 17 descriptions.
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  • Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Npl6p, and Htl1p to form a module important for a broad range of RSC functions [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 180 amino acids

    Gene Ontology:
    Cellular Component: RSC complex [IDALink to PubMed articleLink to PubMed article][IGILink to PubMed article][IMPLink to PubMed article][IPILink to PubMed article]
    Biological Process: cell wall mannoprotein biosynthetic process [IMPLink to PubMed article]
    ATP-dependent chromatin remodeling [IDALink to PubMed article]
    telomere maintenance [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: DNA-dependent ATPase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSNMGYYD VLAGLSALEK SSQVVFSATE LQQLTQQSHA TDKGIEGSEN SKAKVSKPKR  60
   61 VAVHGYLGGK VSLADAAQVE YEVGHSLLGS YVPRQQLEAL SSVDFSHHFH RTLECKAALE 120
  121 THDVFLAGAG QLSLPFQSHI ESPRNSEAKR KRKVIICKRC QSRFIGSHRR SQLREHACVD 180
  181

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) HTL1 LDB7 RSC4 RTT102 SFH1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen PDS1 LDB7 1 Unpublished Fields Lab Data
    View Screen TPT1 LDB7 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] Pfam 26.920819 No description for PF08586.1 was found. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle