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Protein Overview: RETIC_ARATH

General Information:
Name(s) found: RETIC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79324637|ref|NP_001031506.1| LCD1 (LOWER CELL DENSITY 1) [Arabidopsis thaliana] [NCBI NR]
  • gi|4895198|gb|AAD32785.1|AC007661_22 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • ref|NP_850288.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A84798 hypothetical protein At2g37860 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|222423084|dbj|BAH19522.1| AT2G37860 [Arabidopsis thaliana] [NCBI NR]
  • Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana GN=RE PE=1 SV=1 [Swiss-Prot]
  • (Q7XJQ0) At2g37860 protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|25408570|pir||A84798 hypothetical protein At2g37860 [imported] - Arabidopsis thalianagi|30687286|ref|NP_850288.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Similar to expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LCD1 | LCD1 (LOWER CELL DENSITY 1) | chr2:15864030-15865871 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • LCD1 (LOWER CELL DENSITY 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LCD1 | Protein of unknown function (DUF3411) | chr2:15856952-15858793 FORWARD LENGTH=432 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT2G37860 protein OS=Arabidopsis thaliana GN=LCD1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 432 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: leaf development [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV  60
   61 NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD QLENLDIDGN VGDGFNGSDG 120
  121 NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK 180
  181 VLLLRYLDLQ SSAGLLGFAI RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG 240
  241 KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE 300
  301 AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP 360
  361 LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP PAAMAFTVGV RLANNIYGGM 420
  421 QFVDWARLSG CQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] deduced N/A No confident structure predictions are available.
    2 View Details [136..210] MSA 3.01798 View MSA. Confident ab initio structure predictions are available.
    3 View Details [211..432] MSA 1.015957 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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