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Protein Overview: C3H29_ARATH

General Information:
Name(s) found: C3H29_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79324795|ref|NP_001031517.1| CZF1; transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|75315011|sp|Q9XEE6.1|C3H29_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 29; Short=AtC3H29; AltName: Full=AtSZF2 [NCBI NR]
  • gi|6598933|gb|AAF18728.1|AC018721_3 putative CCCH-type zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4587989|gb|AAD25930.1|AF085279_3 hypothetical Cys-3-His zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • pir||G84825 probable CCCH-type zinc finger protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22136518|gb|AAM91337.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20260234|gb|AAM13015.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15225637|ref|NP_181543.1| CZF1; transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1 [Swiss-Prot]
  • (Q9XEE6) Hypothetical CYS-3-HIS zinc finger protein (Putative CCCH-type zinc finger protein) [athaliana3702.FASTAC.txt]
  • putative CCCH-type zinc finger protein [Arabidopsis thaliana]gi|20260234|gb|AAM13015.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana]gi|6598933|gb|AAF18728.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana]gi|4587989|gb|AA [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger (CCCH-type) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CZF1, ZFAR1 | CZF1/ZFAR1; transcription factor | chr2:16779615-16781408 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: CZF1, ZFAR1 | CZF1/ZFAR1 | chr2:16779615-16781408 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical Cys-3-His zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative CCCH-type zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger (CCCH-type) family protein | chr2:16772537-16774330 FORWARD LENGTH=597 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 597 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: response to cold [IEP]
    regulation of transcription [TAS]
    defense response to fungus [IMP]
    response to chitin [IEP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGAKSNLCS SKTLTEVEFM RQKSEDGASA TCLLEFAACD DLSSFKREIE ENPSVEIDES  60
   61 GFWYCRRVGS KKMGFEERTP LMVAAMYGSM EVLNYIIATG RSDVNRVCSD EKVTALHCAV 120
  121 SGCSVSIVEI IKILLDASAS PNCVDANGNK PVDLLAKDSR FVPNQSRKAV EVLLTGIHGS 180
  181 VMEEEEEELK SVVTKYPADA SLPDINEGVY GTDDFRMFSF KVKPCSRAYS HDWTECPFVH 240
  241 PGENARRRDP RKYPYTCVPC PEFRKGSCPK GDSCEYAHGV FESWLHPAQY RTRLCKDETG 300
  301 CARRVCFFAH RRDELRPVNA STGSAMVSPR SSNQSPEMSV MSPLTLGSSP MNSPMANGVP 360
  361 LSPRNGGLWQ NRVNSLTPPP LQLNGSRLKS TLSARDMDME MELRFRGLDN RRLGDLKPSN 420
  421 LEETFGSYDS ASVMQLQSPS RHSQMNHYPS SPVRQPPPHG FESSAAMAAA VMNARSSAFA 480
  481 KRSLSFKPAP VASNVSDWGS PNGKLEWGMQ RDELNKLRRS ASFGIHGNNN NSVSRPARDY 540
  541 SDEPDVSWVN SLVKENAPER VNERVGNTVN GAASRDKFKL PSWAEQMYID HEQQIVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..413] PSI-BLAST 49.69897 Ankyrin-R
    2 View Details [414..597] MSA 1.258995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle