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Protein Overview: gi|12325367, gi|...

General Information:
Name(s) found: gi|31711718 [NCBI NR]
gi|25405483 [NCBI NR]
gi|15217969 [NCBI NR]
gi|12325367 [NCBI NR]
gi|12321677 [NCBI NR]
gi|110735740 [NCBI NR]
Description(s) found:
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  • gi|31711718|gb|AAP68215.1| At1g51580 [Arabidopsis thaliana] [NCBI NR]
  • pir||D96554 hypothetical protein F19C24.19 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15217969|ref|NP_175569.1| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical protein; 15135-12645 [Arabidopsis thaliana] [NCBI NR]
  • gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110735740|dbj|BAE99849.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9C553) Hypothetical protein (At1g51580) [athaliana3702.FASTAC.txt]
  • At1g51580 [Arabidopsis thaliana]gi|12321677|gb|AAG50879.1| hypothetical protein [Arabidopsis thaliana]gi|25405483|pir||D96554 hypothetical protein F19C24.19 [imported] - Arabidopsis thalianagi|12325367|gb|AAG52626.1| hypothetical protein; 15135-12645 [ [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 KH domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | KH domain-containing protein | chr1:19129280-19131770 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein; 15135-12645 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g51580 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA-binding KH domain-containing protein | chr1:19125612-19128102 FORWARD LENGTH=621 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g51580 OS=Arabidopsis thaliana GN=F5D21.23 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 621 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV  60
   61 PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE CAGTSGGDDE EAPSSAQMAL 120
  121 LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI 180
  181 VRISSTDQIP PCAFPGDVVI QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP 240
  241 PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA 300
  301 LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV 360
  361 VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ ATKYESQHDE IVQVIGNLKT 420
  421 VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV 480
  481 GPFHERHCHG PGFDRPPGPG FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG 540
  541 SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG 600
  601 TSDQAHFAQS LLHAFILCGQ S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..242] PSI-BLAST 25.69897 No description for 2annA was found.
    2 View Details [243..442] PSI-BLAST 22.69897 Far upstream binding element, FBP, KH3 and KH4 domains
    3 View Details [443..548] FFAS03 1.12 No description for 2j63A was found.
    4 View Details [549..621] PSI-BLAST 17.09691 HnRNP K, KH3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.766407798661875 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.1608635436815 bayes_pls_golite062009
  • RNA binding
    		•  0.0205643208063799 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.766407798661875 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.1608635436815 bayes_pls_golite062009
  • RNA binding
    		•  0.0205643208063799 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle