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View Structure Prediction Details

Protein: gi|12325367, gi|...
Organism: Arabidopsis thaliana
Length: 621 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12325367, gi|....

Description E-value Query
Range
Subject
Range
gi|114584322 - gi|114584322|ref|XP_001160474.1| PREDICTED: high density lipoprotein binding protein isoform 19 [Pan...
272.0 [0..1] [619..563]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV  60
   61 PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE CAGTSGGDDE EAPSSAQMAL 120
  121 LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI 180
  181 VRISSTDQIP PCAFPGDVVI QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP 240
  241 PE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 2annA
Description: No description for 2annA was found.

Predicted Domain #2
Region A:
Residues: [243-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHSMEYHPQW DHPPPNPMPE DVGPFNRPVV EEEVAFRLLC PADKVGSLIG KGGAVVRALQ  60
   61 NESGASIKVS DPTHDSEERI IVISARENLE RRHSLAQDGV MRVHNRIVEI GFEPSAAVVA 120
  121 RLLVHSPYIG RLLGKGGHLI SEMRRATGAS IRVFAKDQAT KYESQHDEIV QVIGNLKTVQ 180
  181 DALFQILCRL REAMFPGRLP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 1j4wA
Description: Far upstream binding element, FBP, KH3 and KH4 domains
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.766407798661875 bayes_pls_golite062009
nucleic acid binding 0.1608635436815 bayes_pls_golite062009
RNA binding 0.0205643208063799 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [443-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQGMGGPPPP FMGPYPEPPP PFGPRQYPAS PDRYHSPVGP FHERHCHGPG FDRPPGPGFD  60
   61 RPPSPMSWTP QPGIDGHPGG MVPPDVNHGF ALRNEPIGSE NPVMTS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.12
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #4
Region A:
Residues: [549-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANVEIVIPQA YLGHVYGENC SNLNYIKQVS GANVVVHDPK AGTTEGLVVV SGTSDQAHFA  60
   61 QSLLHAFILC GQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.09691
Match: 1j5kA
Description: HnRNP K, KH3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.766407798661875 bayes_pls_golite062009
nucleic acid binding 0.1608635436815 bayes_pls_golite062009
RNA binding 0.0205643208063799 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle