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Protein Overview: PSD2A_ARATH

General Information:
Name(s) found: PSD2A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|32700010|gb|AAP86655.1| 26S proteasome subunit RPN1a [Arabidopsis thaliana] [NCBI NR]
  • gi|20198043|gb|AAD21708.2| 26S proteasome regulatory subunit S2 (RPN1) [Arabidopsis thaliana] [NCBI NR]
  • gi|18399399|ref|NP_565477.1| RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator [Arabidopsis thaliana] [NCBI NR]
  • gi|14532874|gb|AAK64119.1| putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] [NCBI NR]
  • gi|13430608|gb|AAK25926.1|AF360216_1 putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] [NCBI NR]
  • 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2 [Swiss-Prot]
  • 26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2 [Swiss-Prot]
  • (Q9SIV2) 26S proteasome regulatory subunit S2 (RPN1) [athaliana3702.FASTAC.txt]
  • putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana]gi|13430608|gb|AAK25926.1| putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana]gi|32700010|gb|AAP86655.1| 26S proteasome subunit RPN1a [Arabidopsis thaliana]gi|20198043 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Encodes a regulatory subunit of the 26S proteosome complex that is involved in cell cycle progression during embryogenesis [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RPN1A, AtRPN1a | AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding | chr2:8866292-8871780 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 26S proteasome subunit RPN1a [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 26S proteasome regulatory subunit S2 (RPN1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 891 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TAS]
    proteasome regulatory particle, base subcomplex [IDA][ISS]
    plasma membrane [IDA]
    Biological Process: protein catabolic process [TAS]
    regulation of cell cycle [IMP]
    ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: binding [IEA]
    enzyme regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP  60
   61 NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL KAFHETMADS DLKKYLSDIL 120
  121 SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM 180
  181 ELVQQIVAFH MKHNAETEAV DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD 240
  241 MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF 300
  301 ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG 360
  361 ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS GNWLFKNKEH GKTSAAASLG 420
  421 MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS 480
  481 SVRIGAIMGL GISYAGSQND QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA 540
  541 QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL 600
  601 LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM 660
  661 LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD SEVAMSAIIS LGLIGAGTNN 720
  721 ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT 780
  781 LLHACLDMKP IILGKYHYVL YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR 840
  841 PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..891] PSI-BLAST 23.69897 Crystal Structure of The Cand1-Cul1-Roc1 Complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.86831493830281 bayes_pls_golite062009
  • hydrolase activity
    		•  2.5894939457048 bayes_pls_golite062009
  • protein binding
    		•  1.63705839411934 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.13208464017585 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.410980330975135 bayes_pls_golite062009
  • DNA binding
    		•  0.171056781378569 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.123389318446902 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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