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Protein Overview: SHR_ARATH

General Information:
Name(s) found: SHR_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8453100|gb|AAF75234.1|AF233752_1 short-root protein [Arabidopsis thaliana] [NCBI NR]
  • gi|75213595|sp|Q9SZF7.1|SHR_ARATH RecName: Full=Protein SHORT-ROOT; Short=AtSHR; AltName: Full=Protein SHOOT GRAVITROPISM 7; AltName: Full=GRAS family protein 26; Short=AtGRAS-26 [NCBI NR]
  • pir||T04722 hypothetical protein F19F18.140 - Arabidopsis thaliana [NCBI NR]
  • gi|7270747|emb|CAB80430.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4468990|emb|CAB38304.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|190016012|gb|ACE62894.1| At4g37650 [Arabidopsis thaliana] [NCBI NR]
  • gi|15235646|ref|NP_195480.1| SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1 [Swiss-Prot]
  • (Q9SZF7) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|4468990|emb|CAB38304.1| putative protein [Arabidopsis thaliana]gi|8453100|gb|AAF75234.1| short-root protein [Arabidopsis thaliana]gi|7485768|pir||T04722 hypothetical protein F19F18.140 - Arabidopsis thalianagi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Short-root transcription factor (SHR) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SGR7, SHR | SHR (SHORT ROOT); transcription factor | chr4:17691865-17693460 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SHR (SHORT ROOT); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • short-root protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SHR, SGR7 | GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 531 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: iron ion homeostasis [IMP]
    regulation of hormone metabolic process [NAS]
    asymmetric cell division [IMP]
    radial pattern formation [IMP]
    Molecular Function: transcription factor activity [IEP][ISS]
    protein binding [IPI]
    sequence-specific DNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD  60
   61 EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP SSTAAAAALA SPYSSSGHHN 120
  121 DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE 180
  181 QKLASYFLQA LFNRMTGSGE RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV 240
  241 AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND 300
  301 QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA 360
  361 MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE GGFDDEFLRG FGECLRWFRV 420
  421 CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV 480
  481 GYSDEVADDV RALLRRYKEG VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] MSA 5.092996 View MSA. No confident structure predictions are available.
    2 View Details [134..362] MSA 2.134956 View MSA. No confident structure predictions are available.
    3 View Details [363..531] MSA 4.136967 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle