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Protein Overview: MED4_ARATH

General Information:
Name(s) found: MED4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7413560|emb|CAB86039.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15242555|ref|NP_195905.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T48306 hypothetical protein F9G14.160 - Arabidopsis thaliana [NCBI NR]
  • Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana GN=MED4 PE=1 SV=1 [Swiss-Prot]
  • (Q9LZ00) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11283451|pir||T48306 hypothetical protein F9G14.160 - Arabidopsis thalianagi|15242555|ref|NP_195905.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Hydroxyproline-rich glycoprotein family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:652157-653437 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:652159-653439 FORWARD LENGTH=426 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 426 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQHQIVQSP ARLGLTGPGS PSVQNPTPTR HGHPTSSSSS QSQHQQIQQQ PNLLPSSTVA  60
   61 AASSASASAA VSSSALLSLL PPLPRAQALL QQMAVLTSKL FDVSPNRAIW LSAFRGSLPS 120
  121 FLSSHSLPPP PPLENPSPSS TKEILSQFNS LQTQLFEAVT ELQEILDLQD AKQKVAREIK 180
  181 SKDSSLLAFA NKLKDAERVL DMLVDDYSDY RKPKRSKIEE DDEDNDNESS SSSTTVSSQL 240
  241 KLKDILAYAH KISYTTFAPP EFGAGQAPLR GALPPAPQDE QMRASQLYTF ADLDIGLPKT 300
  301 VENMEKKVEA LIEPPPPPEA MDISAIHNLL PPNIAVPSGW KPGMPVELPR DLPLPPPGWK 360
  361 PGDPVVLPPL ESIAAPRAED HQHMRPSQGL HRPPDVIQVR AVQLDILEDD DSSDYSSDDA 420
  421 SSDDED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] deduced N/A No confident structure predictions are available.
    2 View Details [136..327] MSA 9.049996 View MSA. No confident structure predictions are available.
    3 View Details [328..426] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle