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Protein Overview: gi|25511694, gi|...

General Information:
Name(s) found: gi|25511694 [NCBI NR]
gi|15220267 [NCBI NR]
gi|12322087 [NCBI NR]
Description(s) found:
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  • pir||D86481 189.6K hypothetical protein F10O5.11 - Arabidopsis thaliana [NCBI NR]
  • gi|15220267|ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana] [NCBI NR]
  • gi|12322087|gb|AAG51081.1|AC027032_1 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9C8B0) Hypothetical protein [athaliana3702.FASTAC.txt]
  • 189.6K hypothetical protein F10O5.11 - Arabidopsis thalianagi|12322087|gb|AAG51081.1| hypothetical protein [Arabidopsis thaliana]gi|15220267|ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 AT hook motif-containing protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1678 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKKNSHAL FDLNSPPPSE KIPRLGHITA SQSQLTQLNG SNSNGSMPIR SAFNTVFRDI  60
   61 TNLPLSFDVN NQPSSSTQPF DSATSIQYSH GSVERSGLNS IGRENFHRHK TASTRPFSDL 120
  121 TKPNLQPSPQ NLYATMTPAT AYTLNTGQDL SNPYSCISNQ TQTPVMSTEY SHVRNLQAEF 180
  181 EKASTSATNP RAEAKINSDT SSDDENMANM MFDGAVYESD TDVDQNYSLS STDDESEDPT 240
  241 TMQTKSESMA NVSTHEVEDI VSQLSENDIE LDTFSSQIDR FMIPTESTQT ANVPESAPKK 300
  301 RGRPRLAVTK RMRMKEIRQQ NKPGYLDHGD PTYKCKYCGA MMWYDERIRK KETNKESVFT 360
  361 LCCGEGSVKL PFLKESPHLL KNLLSGNHPL SKHYRDNARI FNMVFAMTSF GGKVDKSMPK 420
  421 GRGPAMFRLQ GGNYHLIGSL KLTPGDYAKY SQLYIIDTEN EVENRATVIN KGKNAKPASG 480
  481 KPNLDKNLIE AIIKMLNRCN PYVRRFRTAR ERIQTNDEEP FHMRIIADRQ GVEGRTYSMP 540
  541 TTSEVAALIP GDFRHGMPDR DIVIGKKSNG HLKRINQIHI SYLALQYPLI FCYGEDGFRP 600
  601 GIEKCSKSKS KKKNKKCISM RQWFAFRIQE REVECQTLLR SKRLFQQCLC DAYTTIESNR 660
  661 LNYIKFNQSK LRCENYTSVK EAAAAGATTM EEEGNQLLIP ASFTGGPRYM VQSYYDAMAI 720
  721 CKHYGFPDLF ITFTCNPKWP EITRYYDKRG LNPEDRPNII ARIFKIKLDS LMNDLTVKKM 780
  781 LGKTVASMYT VEFQKRGLPH AHILLFMHAK SKLPTADDID KLISAEIPDK EKEPDLYEVI 840
  841 KNSMIHGPCG SANVNSPCMV DGECSKLYPK KHQDITKIGS DGYPIYRRRK TDDYVEKGGI 900
  901 KCDNRYVVPY NKKLSLRYNA HINVEWCNQN GSIKYLFKYI NKGPDKVVFI VEPTQQTTAG 960
  961 DSETPQQEQG SAEKKKNEIK DWFDCRYVSA SEAVWRIFKY PIQHISTPVQ KLSFHVEGKQ1020
 1021 PAYFDPKSNI EDVLERVANV DSQFMAWLTL NRRNAVGKNG KRARECLYAE IPAYFTWDGE1080
 1081 NKSFKKRTRG FSIGRIHYVS RKMEDEYFLR VLLNIVRGPT SYAEIKTYDG VVYKTFKEAC1140
 1141 FARGILDDDQ VFIDGLVEAT HVRSQTWHLL AEDILKTKRD EFKNPDLTLT ETEIKNYTLQ1200
 1201 EIEKIMLSNG ATLEDIDEFP KPTRDEWKQM LTPEQRGVYN AITEAVFNNL GGVFFVYGFG1260
 1261 GTGKTFIWKT LSAAIRCRGQ IVLNVASSGI ASLLLEGGRT AHSRFGIPLN HDEFSVSLDK1320
 1321 SFSDIIKNTN NKVFGGKVVV FGGDFRQVLP VINGAGRAEI VMSSLNASYL WDHCKVLKLT1380
 1381 KNMRLLANNL SATEAKEIQE FSDWLLAVSD GRINEPNDGV ATIDIPEDLL ITNADKPIET1440
 1441 ITNEIYGDPK ILHEITDPKF FQGRAILAPK NEDVNTINEY LLEQLDAEER IYLSADSIDP1500
 1501 TDSDSLNNPV ITPDFLNSIK LPGLPNHSLC LKVGAPVMLL RNLDPKGGLC NGTRLQITQL1560
 1561 CTQIVEAKVI TGDRIGNIVL IPTVNLTPTD TKLPFKMRRR QFPLSVAFAM TINKSQGQSL1620
 1621 EHIGLYLPKP VFSHGQLYVA LSRVTSKKGL KILILDKDGK LQKQTTNVVF KEVFQNID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] MSA 12.346996 View MSA. No confident structure predictions are available.
    2 View Details [184..301] MSA 1.340994 View MSA. No confident structure predictions are available.
    3 View Details [302..421] deduced N/A No confident structure predictions are available.
    4 View Details [422..614] deduced N/A No confident structure predictions are available.
    5 View Details [615..751] deduced N/A No confident structure predictions are available.
    6 View Details [752..844] deduced N/A No confident structure predictions are available.
    7 View Details [845..987] MSA 1.184976 View MSA. No confident structure predictions are available.
    8 View Details [988..1678] PSI-BLAST 45.69897 No description for 3e1sA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle