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Protein Overview: gi|15237906, gi|...

General Information:
Name(s) found: gi|9755709 [NCBI NR]
gi|67633806 [NCBI NR]
gi|15237906 [NCBI NR]
gi|11357730 [NCBI NR]
Description(s) found:
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  • gi|9755709|emb|CAC01721.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|67633806|gb|AAY78827.1| cathepsin-related [Arabidopsis thaliana] [NCBI NR]
  • gi|15237906|ref|NP_197210.1| cathepsin-related [Arabidopsis thaliana] [NCBI NR]
  • pir||T51563 hypothetical protein F2K13_230 - Arabidopsis thaliana [NCBI NR]
  • (Q9LFJ5) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11357730|pir||T51563 hypothetical protein F2K13_230 - Arabidopsis thalianagi|15237906|ref|NP_197210.1| cathepsin-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cathepsin-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | cathepsin-related | chr5:5619597-5620952 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cathepsin-related [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine proteinases superfamily protein | chr5:5619594-5620949 FORWARD LENGTH=298 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cathepsin-related OS=Arabidopsis thaliana GN=F2K13_230 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: cysteine-type peptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEDGGGDV GAGGIGGIGA GGGKGKGKNV PNELKAEAEA RRKAEAEARQ KAQQDLPQVD  60
   61 EHPLGVFGDG SYLIKDWRQS HRALLSKIIE QIHAICWALV LGKILEFTYN MNRPIAQHMF 120
  121 LDIDSFAEKV KLKADEINAQ KKVITEDMAV GSMKKAFDHV FLKGIEKADG RKKGGGDKVF 180
  181 TIKGRFNEVQ NATAIDIANK VDIGPVGITI DMSVGLRKLK DGIYMVPKPK DGAPKHALTI 240
  241 VAYGMTKEDE LFFVVQNTWG TIWRVNGEGR MIITDTCHMF YLDEVIDDKK KKGKAPIA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..298] PSI-BLAST 69.221849 (Pro)cathepsin L

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.529663942126259 bayes_pls_golite062009
  • hydrolase activity
    		•  0.16837900182603 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle