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Protein Overview: RPD6A_ARATH

General Information:
Name(s) found: RPD6A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|21595784|gb|AAM66131.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17104747|gb|AAL34262.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|15242235|ref|NP_200007.1| NRPB6A; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|13878077|gb|AAK44116.1|AF370301_1 putative DNA-directed RNA polymerase II subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|10177729|dbj|BAB11042.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis thaliana] [NCBI NR]
  • DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana GN=NRPB6A PE=1 SV=1 [Swiss-Prot]
  • (Q9FJ98) DNA-directed RNA polymerase II subunit-like protein [athaliana3702.FASTAC.txt]
  • DNA-directed RNA polymerase II subunit-like protein [Arabidopsis thaliana]gi|17104747|gb|AAL34262.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis thaliana]gi|13878077|gb|AAK44116.1| putative DNA-directed RNA polymerase II subunit [Arabid [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA-directed RNA polymerase II [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA-directed RNA polymerase II, putative | chr5:21121905-21123022 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA-directed RNA polymerase II subunit-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative DNA-directed RNA polymerase II subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase Rpb6 | chr5:21104679-21105796 FORWARD LENGTH=144 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • DNA-directed RNA polymerase II subunit-like protein OS=Arabidopsis thaliana GN=NRPB6A PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 144 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase IV complex [IPI]
    DNA-directed RNA polymerase V complex [IPI]
    DNA-directed RNA polymerase II, core complex [IPI]
    Biological Process: transcription, DNA-dependent [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK  60
   61 TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI AMKELRQRKI PFTIRRYLPD 120
  121 GSFEEWGVDE LIVEDSWKRQ VGGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] PSI-BLAST 37.30103 RPB6

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.372436499192166 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle