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Protein Overview: gi|7485741, gi|4...

General Information:
Name(s) found: gi|7485741 [NCBI NR]
gi|7269807 [NCBI NR]
gi|67633766 [NCBI NR]
gi|4972055 [NCBI NR]
gi|15233451 [NCBI NR]
Description(s) found:
Found 14 descriptions.
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  • pir||T08964 hypothetical protein F19B15.120 - Arabidopsis thaliana [NCBI NR]
  • gi|7269807|emb|CAB79667.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|67633766|gb|AAY78807.1| putative reverse transcriptase/RNA-dependent DNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233451|ref|NP_194638.1| reverse transcriptase, putative / RNA-dependent DNA polymerase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 575 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: RNA-dependent DNA replication [ISS]
    Molecular Function: nucleic acid binding [IEA]
    RNA-directed DNA polymerase activity [ISS]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPTYTMAC FLLPKTVCKQ IISVLADFWW RNKQEAKGMH WKAWDHLSCY KAEGGIGFKD  60
   61 IEAFNLALLG KQMWRMLSRP ESLMAKVFKS RYFHKSDPLN APLGSRPSFV WKSIHASQEI 120
  121 LRQGARAVVG NGEDIIIWRH KWLDSKPASA ALRMQRVPPQ EYASVSSILK VSDLIDESGR 180
  181 EWRKDVIEML FPEVERKLIG ELRPGGRRIL DSYTWDYTSS GDYTVKSGYW VLTQIINKRS 240
  241 SPQEVSEPSL NPIYQKIWKS QTSPKIQHFL WKCLSNSLPV AGALAYRHLS KESACIRCPS 300
  301 CKETVNHLLF KCTFARLTWA ISSIPIPLGG EWADSIYVNL YWVFNLGNGN PQWEKASQLV 360
  361 PWLLWRLWKN RNELVFRGRE FNAQEVLRRA EDDLEEWRIR TEAESCGTKP QVNRSSCGRW 420
  421 RPPPHQWVKC NTDATWNRDN ERCGIGWVLR NEKGEVKWMG ARALPKLKSV LEAELEAMRW 480
  481 AVLSLSRFQY NYVIFESDSQ VLIEILNNDE IWPSLKPTIQ DLQRLLSQFT EVKFVFIPRE 540
  541 GNTLAERVAR ESLSFLNYDP KLYSIVPSWA RSSMD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..575] PSI-BLAST 16.0 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.518931870161593 bayes_pls_golite062009
  • transferase activity
    		•  0.35636561630516 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.32441153240842 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.29860211454192 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.0603497936698201 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.0602875211585996 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.57

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle