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Protein Overview: gi|15236063, gi|...

General Information:
Name(s) found: gi|7486332 [NCBI NR]
gi|7270077 [NCBI NR]
gi|3281854 [NCBI NR]
gi|15236063 [NCBI NR]
Description(s) found:
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  • pir||T05096 hypothetical protein F28M20.70 - Arabidopsis thaliana [NCBI NR]
  • gi|7270077|emb|CAB79892.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|3281854|emb|CAA19749.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15236063|ref|NP_194902.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • (O81774) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|3281854|emb|CAA19749.1| putative protein [Arabidopsis thaliana]gi|7486332|pir||T05096 hypothetical protein F28M20.70 - Arabidopsis thalianagi|15236063|ref|NP_194902.1| hypothetical protein [Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to ATSLY1, protein transporter [Arabidopsis thaliana] (TAIR:AT2G17980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47451.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83258.1); contains InterPro domain [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to ATSLY1, protein transporter [Arabidopsis thaliana] (TAIR:AT2G17980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47451.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83258.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) | chr4:15363784-15364355 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Sec1/munc18-like (SM) proteins superfamily | chr4:15363778-15364349 FORWARD LENGTH=171 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein AT4g31740 OS=Arabidopsis thaliana GN=F28M20.70 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 171 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: vesicle-mediated transport [IEA]
    vesicle docking during exocytosis [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLRFAIMY LLSLETINQS EVEAVEAALP SADSASRSNI VDWAEKLYGQ SISAVTPGVK  60
   61 NLLSSDQQLP VARTVEALTD GKPNPETDSY LILDARASKS GSIDNSYVKG PFEEAIVFMI 120
  121 GGGNYIEYSS LQELSQRQEM VNNIIYGATE ILTGTELVEQ LGELGQKMGL R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] PSI-BLAST 44.0 Neuronal Sec1, NSec1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle