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Protein Overview: SEN21_ARATH

General Information:
Name(s) found: SEN21_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|88196761|gb|ABD43023.1| At3g45590 [Arabidopsis thaliana] [NCBI NR]
  • gi|75181816|sp|Q9M1E8.1|SEN21_ARATH RecName: Full=tRNA-splicing endonuclease subunit Sen2-1; AltName: Full=tRNA-intron endonuclease Sen2-1; Short=AtSen1 [NCBI NR]
  • gi|6996262|emb|CAB75488.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|62320332|dbj|BAD94688.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15231186|ref|NP_190145.1| ATSEN1 (SPLICING ENDONUCLEASE 1); nuclease/ nucleic acid binding / tRNA-intron endonuclease [Arabidopsis thaliana] [NCBI NR]
  • gi|145332759|ref|NP_001078245.1| ATSEN1 (SPLICING ENDONUCLEASE 1); nuclease/ nucleic acid binding / tRNA-intron endonuclease [Arabidopsis thaliana] [NCBI NR]
  • pir||T47499 hypothetical protein F9K21.170 - Arabidopsis thaliana [NCBI NR]
  • tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 SV=1 [Swiss-Prot]
  • (Q9M1E8) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11290094|pir||T47499 hypothetical protein F9K21.170 - Arabidopsis thalianagi|15231186|ref|NP_190145.1| tRNA-splicing endonuclease, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 tRNA-splicing endonuclease subunit Sen2-1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATSEN1 | ATSEN1 (SPLICING ENDONUCLEASE 1); tRNA-intron endonuclease | chr3:16744047-16744760 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: ATSEN1 | ATSEN1 (SPLICING ENDONUCLEASE 1) | chr3:16744047-16744760 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • tRNA-splicing endonuclease subunit Sen2-1 (AtSen1) (tRNA-intron endonuclease Sen2-1) [nr-271106-contam.fasta]
  • ATSEN1 (SPLICING ENDONUCLEASE 1); tRNA-intron endonuclease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g45590 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 | chr3:16733062-16733775 FORWARD LENGTH=237 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 237 amino acids

    Gene Ontology:
    Cellular Component: tRNA-intron endonuclease complex [IEA][ISS]
    Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation [IEA][ISS]
    Molecular Function: nucleic acid binding [IEA]
    nuclease activity [IEA]
    tRNA-intron endonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRWKWKGA EAKALAEPVS KTVSELRSSL TQTEALGFLS SCNVLLSVES EEAELLDRCC  60
   61 FGRLVVGAEK DKRWIQLSFE EAFFLFYKLK CIKICLHGRS LENEVDLWRS MSSFKQDFAI 120
  121 LYKAYSHLRS KNWIVRSGLQ YGVDFVVYRH HPSLVHSEYA VLVQSIGGND RLKVWSDIHC 180
  181 SVRLTGSVAK SLLVLYVNRK VNTEKMNLPL CLEDYTVEEQ TIRRWSPELS REDETRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..237] PSI-BLAST 41.0 tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle