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Protein Overview: PPD6_ARATH

General Information:
Name(s) found: PPD6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7594543|emb|CAB88068.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|75180968|sp|Q9LXX5.1|PPD6_ARATH RecName: Full=PsbP domain-containing protein 6, chloroplastic; AltName: Full=OEC23-like protein 1; Flags: Precursor [NCBI NR]
  • gi|222424215|dbj|BAH20066.1| AT3G56650 [Arabidopsis thaliana] [NCBI NR]
  • gi|15228983|ref|NP_191224.1| thylakoid lumenal 20 kDa protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T49066 hypothetical protein T5P19.300 - Arabidopsis thaliana [NCBI NR]
  • PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1 [Swiss-Prot]
  • (Q9LXX5) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11358388|pir||T49066 hypothetical protein T5P19.300 - Arabidopsis thalianagi|15228983|ref|NP_191224.1| thylakoid lumenal 20 kDa protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Thylakoid lumenal 20 kDa protein, SP:Q9LXX5 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | thylakoid lumenal 20 kDa protein | chr3:20995786-20996892 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:20984807-20985913 FORWARD LENGTH=262 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 262 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    thylakoid lumen [IDA]
    chloroplast thylakoid lumen [IDA]
    thylakoid [IDA]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASLVPTS KIFSVSPKSS ASIKARSRVV VASSQQQQQP RRRELLLKSA VAIPAILQLK  60
   61 EAPISAAREV EVGSYLPLSP SDPSFVLFKA KPSDTPALRA GNVQPYQFVL PPNWKQLRIA 120
  121 NILSGNYCQP KCAEPWIEVK FENEKQGKVQ VVASPLIRLT NKPNATIEDL GEPEKVIASL 180
  181 GPFVTGNSYD SDELLKTSIE KIGDQTYYKY VLETPFALTG SHNLAKATAK GSTVVLFVVS 240
  241 ATEKQWQSSQ KTLEAILDSF QL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] deduced N/A No confident structure predictions are available.
    2 View Details [96..262] PSI-BLAST 51.0 Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle