YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15293173, gi|...

General Information:
Name(s) found: gi|4587563 [NCBI NR]
gi|25518006 [NCBI NR]
gi|18379060 [NCBI NR]
gi|15293173 [NCBI NR]
gi|13430636 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|4587563|gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene. [Arabidopsis thaliana] [NCBI NR]
  • pir||E86162 hypothetical protein F10O3.3 - Arabidopsis thaliana [NCBI NR]
  • gi|18379060|ref|NP_563676.1| splicing factor Prp18 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15293173|gb|AAK93697.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13430636|gb|AAK25940.1|AF360230_1 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SA55) F10O3.3 protein (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|13430636|gb|AAK25940.1| unknown protein [Arabidopsis thaliana]gi|4587563|gb|AAD25794.1| Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene. [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splicing factor Prp18 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | splicing factor Prp18 family protein | chr1:754471-756223 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene. [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • | Symbols: | splicing factor Prp18 family protein | chr1:754471-756223 REVERSE LENGTH=420 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F10O3.3 protein OS=Arabidopsis thaliana GN=F10O3.3 PE=2 SV=1 [ARATH-contam.fasta]
  • Putative uncharacterized protein At1g03140 OS=Arabidopsis thaliana GN=F10O3.3 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 420 amino acids

    Gene Ontology:
    Cellular Component: spliceosomal complex [IEA][ISS]
    Biological Process: RNA splicing [IEA][ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG  60
   61 GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE NLILPRQEVI RRLRFLKQPM 120
  121 TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS 180
  181 RDERGRDEGD RGETREDELS GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW 240
  241 KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK 300
  301 RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK 360
  361 RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG GNREQVSEER LRLMPSQSES 420
  421

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..282] PSI-BLAST 6.0 Heavy meromyosin subfragment
    2 View Details [283..420] PSI-BLAST 47.522879 Functional domain of the splicing factor Prp18


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle