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Protein Overview: gi|6561963, gi|1...

General Information:
Name(s) found: gi|6561963 [NCBI NR]
gi|15229181 [NCBI NR]
gi|11255906 [NCBI NR]
Description(s) found:
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  • gi|6561963|emb|CAB62467.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15229181|ref|NP_190532.1| 2-oxoacid-dependent oxidase, putative [Arabidopsis thaliana] [NCBI NR]
  • pir||T46240 hypothetical protein T9C5.220 - Arabidopsis thaliana [NCBI NR]
  • (Q9SCJ6) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|15229181|ref|NP_190532.1| 2-oxoacid-dependent oxidase, putative [Arabidopsis thaliana]gi|11255906|pir||T46240 hypothetical protein T9C5.220 - Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 2-oxoacid-dependent oxidase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 2-oxoacid-dependent oxidase, putative | chr3:18408744-18411240 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • iron ion binding / isopenicillin-N synthase/ oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 369 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: cellular response to starvation [TAS]
    aging [TAS]
    Molecular Function: oxidoreductase activity [IEA][ISS]
    iron ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNFKSLLP VIGTDETLNS LFSANVALII KVFILNLKET KMHETMVFVD ISPLVVKCDD  60
   61 ANMAEDAGVA EVVGKLDRAC RDAGFFYVIG HGISEDFIRK VRVMSHQFFE LPYEEKLKIK 120
  121 ITPAAGYRGY QRIGLNLTNG KQDMHEAIDC YKEFKQGKHG DIGKVMEGAN QWPENPQEYK 180
  181 ELMEEYIKLC IDLSRNILRG ISLALGGSPY EFEGKMLTDP FWIMRILGYP VTRLIFFTYS 240
  241 GAHTDYGLLS LINQDDDKTA LQVRDLAGDW IPVIPIPGSF VCNIGDMLKI LSNGVYESTL 300
  301 HRVINNSPRY RVCVGFFYET NFDAAVEPLD IFKEKYPGKG TSQVFKRVVY GEHLVHKLQT 360
  361 TFQNLVEHS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..369] PSI-BLAST 84.0 No description for 2brtA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
    		•  2.13037944896112 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
    		•  1.96457406152694 bayes_pls_golite062009
  • binding
    		•  1.78258647804494 bayes_pls_golite062009
  • catalytic activity
    		•  0.921320409505 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.778311364997835 bayes_pls_golite062009
  • DNA binding
    		•  0.705906158188305 bayes_pls_golite062009
  • protein binding
    		•  0.200706152890822 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle