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Protein Overview: gi|7019667, gi|1...

General Information:
Name(s) found: gi|7019667 [NCBI NR]
gi|15233246 [NCBI NR]
gi|11358243 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|7019667|emb|CAB75768.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233246|ref|NP_191094.1| PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1); RNA binding / mRNA binding [Arabidopsis thaliana] [NCBI NR]
  • pir||T47673 hypothetical protein T26I12.220 - Arabidopsis thaliana [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 597 amino acids

    Gene Ontology:
    Cellular Component: extrinsic to membrane [IDA]
    Biological Process: cell plate formation involved in plant-type cell wall biogenesis [IDA]
    Molecular Function: RNA binding [ISS]
    mRNA binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSNKKLKQ RIRQDLAESL SVSVSETNPQ SQSLKLLLDS SSHKPRLSKR EKRRNCETFA  60
   61 REDDEIRENE VGNGGSSEKT DTKIKKKRKR DDAVEVDELE GDEGTKEEQK PQKKKNKKKK 120
  121 KKRKVNKTPK KAEEGNVEEK VKVEEIEVNT DNKEEDGVVP NKLYVGGIPY QSTEDEIRSY 180
  181 FRSCGVIIKV DCKMRPEDGA FSGIAFITFD TEDGAKRALA FDRAAMGDRY LTIQQYVKTT 240
  241 TPSIPRRKTS SGFAPEMVDG YNRVYIGNLA WDTTERDIRK LFSDCVINSV RLGKNKETGE 300
  301 FKGYAHVDFK DSVSVAIALK LDQQVICGRP VKICCALKDR PATDHTPGET NNAGSYNMED 360
  361 TYAAADPVPA LAGRSEVDDG NYFATTVSSS KVKRRVCYEC GEKGHLSTAC PIKLQKADDQ 420
  421 ANSKLGQETV DGRPAMQSYG LPKNSGDSYY MNETYASTNE TYNGGYSASA VGTGKVKRRN 480
  481 CYECGEKGHL STACPIKLQN TSHTNSTLDH QTVEAGPTQV TSYSLQKKTR DTENNGGSFM 540
  541 DESYATVPIS IDVTNGANDA SLTSAVSTGK IKKRNCYECG EKGHLSSACP NKLQKQG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..249] PSI-BLAST 20.0 No description for 2g4bA was found.
    2 View Details [250..346] PSI-BLAST 52.522879 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    3 View Details [347..506] FFAS03 2.14 No description for 2ihxA was found.
    4 View Details [507..597] PSI-BLAST 5.0 HIV nucleocapsid

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle