| Protein: | gi|7019667, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 597 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7019667, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
288.0 | [0..18] | [596..80] |
|
Region A: Residues: [1-249] |
1 11 21 31 41 51
| | | | | |
1 MVLSNKKLKQ RIRQDLAESL SVSVSETNPQ SQSLKLLLDS SSHKPRLSKR EKRRNCETFA 60
61 REDDEIRENE VGNGGSSEKT DTKIKKKRKR DDAVEVDELE GDEGTKEEQK PQKKKNKKKK 120
121 KKRKVNKTPK KAEEGNVEEK VKVEEIEVNT DNKEEDGVVP NKLYVGGIPY QSTEDEIRSY 180
181 FRSCGVIIKV DCKMRPEDGA FSGIAFITFD TEDGAKRALA FDRAAMGDRY LTIQQYVKTT 240
241 TPSIPRRKT
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 2g4bA |
| Description: | No description for 2g4bA was found. |
|
Region A: Residues: [250-346] |
1 11 21 31 41 51
| | | | | |
1 SSGFAPEMVD GYNRVYIGNL AWDTTERDIR KLFSDCVINS VRLGKNKETG EFKGYAHVDF 60
61 KDSVSVAIAL KLDQQVICGR PVKICCALKD RPATDHT
|
| Detection Method: | |
| Confidence: | 52.522879 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [347-506] |
1 11 21 31 41 51
| | | | | |
1 PGETNNAGSY NMEDTYAAAD PVPALAGRSE VDDGNYFATT VSSSKVKRRV CYECGEKGHL 60
61 STACPIKLQK ADDQANSKLG QETVDGRPAM QSYGLPKNSG DSYYMNETYA STNETYNGGY 120
121 SASAVGTGKV KRRNCYECGE KGHLSTACPI KLQNTSHTNS
|
| Detection Method: | |
| Confidence: | 2.14 |
| Match: | 2ihxA |
| Description: | No description for 2ihxA was found. |
|
Region A: Residues: [507-597] |
1 11 21 31 41 51
| | | | | |
1 TLDHQTVEAG PTQVTSYSLQ KKTRDTENNG GSFMDESYAT VPISIDVTNG ANDASLTSAV 60
61 STGKIKKRNC YECGEKGHLS SACPNKLQKQ G
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
