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Protein Overview: DUS3L_ARATH

General Information:
Name(s) found: DUS3L_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75266821|sp|Q9T0J6.1|DUS3L_ARATH RecName: Full=tRNA-dihydrouridine synthase 3-like; AltName: Full=Zinc finger CCCH domain-containing protein 50; Short=AtC3H50 [NCBI NR]
  • pir||T06088 hypothetical protein T9A14.170 - Arabidopsis thaliana [NCBI NR]
  • gi|7270872|emb|CAB80552.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4490341|emb|CAB38623.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234862|ref|NP_195600.1| dihydrouridine synthase family protein [Arabidopsis thaliana] [NCBI NR]
  • tRNA-dihydrouridine synthase 3-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=1 [Swiss-Prot]
  • (Q9T0J6) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|4490341|emb|CAB38623.1| putative protein [Arabidopsis thaliana]gi|7487839|pir||T06088 hypothetical protein T9A14.170 - Arabidopsis thalianagi|15234862|ref|NP_195600.1| dihydrouridine synthase family protein [Ar [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Dihydrouridine synthase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | dihydrouridine synthase family protein | chr4:18135903-18139094 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • FAD binding / nucleic acid binding / oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 700 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: tRNA processing [IEA]
    metabolic process [IEA]
    oxidation reduction [IEA]
    Molecular Function: tRNA dihydrouridine synthase activity [IEA]
    FAD binding [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVIAEHAV DTSVEGDAKA ALPVQSTKQF SVYEATSEEL IERSMAPIKK EFLCPPPPSR  60
   61 SVKQNDAADV RAPQSGLVQE KKSKRQLKRE RREVLIRITS VLQSTINLCP QVARTEDVDS 120
  121 CQYKDKCRFN HDIEAFKAQK ADDIEGQCPF VASGMKCAYG LSCRFLGSHR DITGNSDDKE 180
  181 KSEMNFFNKE TQRLLWKNKM TFTNADAKLK SLGLLGHAKK SNAAEEITAE KTQNGMNGTQ 240
  241 ATEVAVDSAV SSEHTSEMIQ DVDIPGPLET EEVRPMKKAK SEDQKNSKTG DVGGVYDGVK 300
  301 LEEETKKNGY PTSKANVEDE DSIKIVETDS SLKLHPREKK KLIDFRDKLY LAPLTTVGNL 360
  361 PFRRLCKVLG ADVTCGEMAM CTNLLQGQAS EWALLRRHSS EDLFGVQICG SYPDTVSRVV 420
  421 ELIDRECTVD FIDINMGCPI DMVVNKSAGS ALLNKPLRMK NIVEVSSSIV ETPITIKVRT 480
  481 AFFEGKNRID SLIADIGNWG ATAVTIHGRS RQQRYSKSAD WDYIYQCTKN ATTNLQVIGN 540
  541 GDVYSYLDWN KHKSDCPELS SCMIARGALI KPWIFTEIKE QRHWDITSGE RLNIMKDFVR 600
  601 FGLQHWGSDT KGVETTRHFL LEWLSYTFRY IPVGLLDVIP QQINWRPPSY FGRDDLETLM 660
  661 MSESAGDWVR ISEMLLGKVP EGFTFAPKHK SNAYDRAENG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] deduced N/A No confident structure predictions are available.
    2 View Details [95..184] PSI-BLAST 18.69897 Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
    3 View Details [185..287] deduced N/A No confident structure predictions are available.
    4 View Details [288..345] PSI-BLAST 18.154902 Trimethylamine dehydrogenase, N-terminal domain; Trimethylamine dehydrogenase, C-terminal domain; Trimethylamine dehydrogenase, middle domain
    5 View Details [346..700] PSI-BLAST 50.522879 Crystal structure of a putative flavin oxidoreductase with flavin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle