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Protein Overview: gi|42573247, gi|...

General Information:
Name(s) found: gi|6759449 [NCBI NR]
gi|42573247 [NCBI NR]
gi|11357837 [NCBI NR]
Description(s) found:
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  • gi|6759449|emb|CAB69854.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|42573247|ref|NP_974720.1| glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T45966 hypothetical protein F7J8.240 - Arabidopsis thaliana [NCBI NR]
  • (Q9LFB0) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11357837|pir||T45966 hypothetical protein F7J8.240 - Arabidopsis thalianagi|42573247|ref|NP_974720.1| glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase starch-binding domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase starch-binding domain-containing protein | chr5:105366-107044 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • catalytic [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Carbohydrate-binding-like fold | chr5:105367-107045 FORWARD LENGTH=385 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Carbohydrate-binding domain-containing protein OS=Arabidopsis thaliana GN=F7J8_240 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 385 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: catalytic activity [IEA][ISS]
    carbohydrate binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGIGRTLTS SSPSKIILED LPPGIYRYGT EIFTSVPRKT FHHIKFLRLD SAQSSRILKP  60
   61 VPLRSSSIKD SQVNVEDEEI EASNKTVRVR FQLRKECVFG EHFFIVGDDP VFGGLWDPET 120
  121 ALPLNWSDGN VWTVDLDLPV GRLVEFKLLL KAQTGEILWQ PGPNRALETW ETNKTIRICE 180
  181 DWDNADLQMM IEEDFVPYTN ISSIGSEDED EVLGSVQQNS SVVAVENAGY VSDESAQNSS 240
  241 FSIQSEKTME PSNGALTARE VIKEAMFTEE ESPVLVPGLI PLSDLDNEQV EVINEGKAET 300
  301 FPEVDKKQEP KAERNKKAKV KAISLFEKSE QEAVKSVEQR QYNAVEEEQQ RLETEPLGTP 360
  361 DVLFENDIQW GRRTLYKLLS NFRLF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 44.69897 CYCLODEXTRIN GLUCANOTRANSFERASE (E.C.2.4.1.19) (CGTASE)
    2 View Details [184..385] MSA 1.114963 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle