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Protein Overview: SDN4_ARATH

General Information:
Name(s) found: SDN4_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana GN=SDN4 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 322 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLQAMRLR EANRLMIAKF KKESPANDSP EQRLVRLTNE NPQYNVDFLF HSYSKDWFVS  60
   61 DVGMKMSNVM IPNQMLALDC EMVLCEDGTE GVVRVGAVDR NLKVILDEFV KPHKPVVDYR 120
  121 TAITGVTAED VQKATLSLVD IQEKLRPFLS AGAILIDHPI VIDTSLVFKY PNSRKLRRPS 180
  181 LNTLCMSVLG YEVQKAGVSH HCVHDAAAAM KLALAVIKKR VDTTITLTKE AEKSRLFLHR 240
  241 IPHHLSSEEL KKDLALKFFP KNFTIDVKPA KTQGGYYCAV VIFGSSVEAN QAFENVNGYK 300
  301 ETDSSGLPQK LISCSISTFY VR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..228] PSI-BLAST 12.69897 No description for 1zbuA was found.
    2 View Details [229..322] FFAS03 1.06 solution structure of RNA binding domain in Hypothetical protein LOC91801

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle