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Protein Overview: AT13A_ARATH

General Information:
Name(s) found: AT13A_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Autophagy-related protein 13a OS=Arabidopsis thaliana GN=ATG13A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 603 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFPENLPSD IGRLEQIVSH FFPKALHIVL NSRIPSLQSR GRTRERLSGL NVRKSDKWFN  60
   61 LVMGDRPAAL EKLHSWHRNI LDSMIIDIIL VHPISNDNLD DDDDHSDSVV RSAETVIERW 120
  121 VVQYENPLIM SPQSSDSATR YQKVYKKSII LLRSLYAQTR LLPAYRVSRQ LSSSLASSGY 180
  181 DLIYKVSSFS DIFSGPVTET MKEFRFAPVE VPPGRLCASV TYRSDLSDFN LGAHITLPPR 240
  241 IITDYVGSPA TDPMRFFPSP GRSVEGHSFT GRAGRPPLTG SSAERPHSWT SGFHRPPAQF 300
  301 ATPNQSFSPA QSHQLSPGLH DFHWSRTDAF GDNHQLSPPF SPSGSPSTPR YISGGNSPRI 360
  361 NVRPGTAPVT IPSSATLNRY VSSNFSEPGR NPLPPFSPKS TRRSPSSQDS LPGIALYRSS 420
  421 RSGESPSGLM NQYPTQKLSK DSKYDSGRFS GVLSSSDSPR FAFSRSPSRL SSQDDLDDPD 480
  481 CSCPFDFDDV DESGLQYSHS LDRRKTSSSI SQSLPLGRRS SQDAAVGVLV HMLKTAPPLR 540
  541 QDSSTYMASM SGVQREGSVS GTESEFSMAR STSDALEELR NYKQLKDLLL SKSKSGSGPT 600
  601 RVH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] deduced N/A No confident structure predictions are available.
    2 View Details [87..326] PSI-BLAST 35.154902 RBP1
    3 View Details [327..421] deduced N/A No confident structure predictions are available.
    4 View Details [422..603] MSA 2.181994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle