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Protein Overview: gi|11358236, gi|...

General Information:
Name(s) found: gi|15231170 [NCBI NR]
gi|11358236 [NCBI NR]
gi|10045558 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|15231170|ref|NP_190793.1| myb family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • pir||T46095 hypothetical protein T25B15.20 - Arabidopsis thaliana [NCBI NR]
  • gi|10045558|emb|CAC07916.1| putative protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1677 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA splicing [ISS]
    Molecular Function: DNA binding [IEA][ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQDHASWDR KELLRQRKHD RPEQSFESPP FRWRDSPSSH HVPREFSSRL GSGDFRRPSS  60
   61 LTQLLRLIGS ELMRLLFKGA IFNTQGGRHQ FVEETSHGYT SSRSSARMFD NYRPSASRGD 120
  121 WRYTRNCRDD RVSVSQKEWK CNTWEMSNGS SRSFERPFGI RNGRRSVDER PLHASDTHST 180
  181 VVNSLDPANS AHYLDNEIST PVRSLKIKNE HKFSDQRLSL PSDPHSECIS LFERPSSENN 240
  241 YGNKVCSPAK QCNDLMYGRR LVSDNSLDAP IPNAELEGTW EQLRLKDPQD NNSLHGINDI 300
  301 DGDRKCAKES SLGATGKLPL WNSSGSFASQ SSGFSHSSSL KSLGAVDSSD RKIEVLPKIV 360
  361 TVTQSSSGDA TACATTTHLS EEMSSRKKQR LGWGEGLAKY EKKKVDVNPN EDGTTLMENG 420
  421 LEELHSLNKN IADKSPTAAI VPDYGSPTTP SSVACSSSPG FADKSSPKAA IAASDVSNMC 480
  481 RSPSPVSSIH LERFPINIEE LDNISMERFG CLLNELLGTD DSGTGDSSSV QLTSMNTLLA 540
  541 WKGEILKAVE MTESEIDLLE NKHRTLKLEG RRHSRVVGPS SYCCDGDANV PKEQASCSLD 600
  601 PKATASSVAK TLVRAPVHQA GLAKVPADVF EDSPGEVKPL SQSFATVERE EDILPIPSMK 660
  661 AAVSSKEINT PAFANQETIE VSSADDSMAS KEDLFWAKLL SANKKYACES SGVFNQLLPR 720
  721 DFNSSDNSRF PGICQTQFDS HVQEKIADRV GLLRAREKIL LLQFKAFQLS WKKDLDQLAL 780
  781 AKYQSKSSKK TELYPNAKNG GYLKLPQSVR LRFSSSAPRR DSVVPTTELV SYMEKLLPGT 840
  841 HLKPFRDILK MPAMILDEKE RVMSRFISSN GLIEDPCDVE KERTMINPWT SEEKEIFLNL 900
  901 LAMHGKDFKK IASSLTQKTT ADCIDYYYKN HKSDCFGKIK KQRAYGKEGK HTYMLAPRKK 960
  961 WKREMGAASL DILGDVSIIA ANAGKVASTR PISSKKITLR GCSSANSLQH DGNNSEGCSY1020
 1021 SFDFPRKRTA GADVLAVGPL SPEQINSCLR TSVSSRERCM DHLKFNHVVK KPRISHTLHN1080
 1081 ENSNTLHNEN SNEEDDSCSE ESCGETGPIH WTDDERSAFI QGFSLFGKNF ASISRYVGTR1140
 1141 SPDQCKVFFS KVRKCLGLES IKFGSGNVST SVSVDNGNEG GGSDLEDPCP MESNSGIVNN1200
 1201 GVCAKMGMNS PTSPFNMNQD GVNQSGSANV KADLSRSEEE NGQKYLCLKD DNNLVNNAYV1260
 1261 NGGFPSLVSE SCRDLVDINT VESQSQAAGK SKSNDLMSME IDEGVLTSVT ISSEPLYCGL1320
 1321 SVLSNVIVET PTEISRKGSG DQGATMPKFS SKNQDGVMQA ANRTRNSGLE PESAPSGFRY1380
 1381 PECLHHVPIE VCTENPIGVS APRGNPNCHA ESESGNSLVG QVDETHDLGW PKNNLELDGR1440
 1441 LQVLGHVNPE QIGLLKATNT ESCQNPQRSV TQDLSRISRS KSDLIVKTQR TGEGFSLTKC1500
 1501 TSSAPKPLAV SHKEGRSGHS RSHSFSLSDT ERLHKNGDVK LFGTVLTTDE NGIKQKHNPC1560
 1561 GIVRSSSTLS RDHDTRHHYI NQQHLQNVPI TSYGFWDGNR IQTGLTSLPE SAKLLASCPE1620
 1621 AFSTHLKQQV GNSKEILVDV NGGILSFGKH NEDRAESSSA KDEGNIGGVN GVAEAAT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..270] deduced N/A No confident structure predictions are available.
    2 View Details [271..369] deduced N/A No confident structure predictions are available.
    3 View Details [370..724] PSI-BLAST 19.045757 Heavy meromyosin subfragment
    4 View Details [725..816] PSI-BLAST 4.522879 Tropomyosin
    5 View Details [817..967] PSI-BLAST 8.69897 Solution Structure of the SMRT Deacetylase Activation Domain
    6 View Details [968..1220] PSI-BLAST 17.522879 No description for 2iw5B was found.
    7 View Details [1221..1313] deduced N/A No confident structure predictions are available.
    8 View Details [1314..1379] deduced N/A No confident structure predictions are available.
    9 View Details [1380..1571] deduced N/A No confident structure predictions are available.
    10 View Details [1572..1677] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle