| Protein: | gi|11358236, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1677 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358236, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..371] | [1366..1841] |
|
Region A: Residues: [1-270] |
1 11 21 31 41 51
| | | | | |
1 MPQDHASWDR KELLRQRKHD RPEQSFESPP FRWRDSPSSH HVPREFSSRL GSGDFRRPSS 60
61 LTQLLRLIGS ELMRLLFKGA IFNTQGGRHQ FVEETSHGYT SSRSSARMFD NYRPSASRGD 120
121 WRYTRNCRDD RVSVSQKEWK CNTWEMSNGS SRSFERPFGI RNGRRSVDER PLHASDTHST 180
181 VVNSLDPANS AHYLDNEIST PVRSLKIKNE HKFSDQRLSL PSDPHSECIS LFERPSSENN 240
241 YGNKVCSPAK QCNDLMYGRR LVSDNSLDAP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [271-369] |
1 11 21 31 41 51
| | | | | |
1 IPNAELEGTW EQLRLKDPQD NNSLHGINDI DGDRKCAKES SLGATGKLPL WNSSGSFASQ 60
61 SSGFSHSSSL KSLGAVDSSD RKIEVLPKIV TVTQSSSGD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [370-724] |
1 11 21 31 41 51
| | | | | |
1 ATACATTTHL SEEMSSRKKQ RLGWGEGLAK YEKKKVDVNP NEDGTTLMEN GLEELHSLNK 60
61 NIADKSPTAA IVPDYGSPTT PSSVACSSSP GFADKSSPKA AIAASDVSNM CRSPSPVSSI 120
121 HLERFPINIE ELDNISMERF GCLLNELLGT DDSGTGDSSS VQLTSMNTLL AWKGEILKAV 180
181 EMTESEIDLL ENKHRTLKLE GRRHSRVVGP SSYCCDGDAN VPKEQASCSL DPKATASSVA 240
241 KTLVRAPVHQ AGLAKVPADV FEDSPGEVKP LSQSFATVER EEDILPIPSM KAAVSSKEIN 300
301 TPAFANQETI EVSSADDSMA SKEDLFWAKL LSANKKYACE SSGVFNQLLP RDFNS
|
| Detection Method: | |
| Confidence: | 19.045757 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [725-816] |
1 11 21 31 41 51
| | | | | |
1 SDNSRFPGIC QTQFDSHVQE KIADRVGLLR AREKILLLQF KAFQLSWKKD LDQLALAKYQ 60
61 SKSSKKTELY PNAKNGGYLK LPQSVRLRFS SS
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [817-967] |
1 11 21 31 41 51
| | | | | |
1 APRRDSVVPT TELVSYMEKL LPGTHLKPFR DILKMPAMIL DEKERVMSRF ISSNGLIEDP 60
61 CDVEKERTMI NPWTSEEKEI FLNLLAMHGK DFKKIASSLT QKTTADCIDY YYKNHKSDCF 120
121 GKIKKQRAYG KEGKHTYMLA PRKKWKREMG A
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1xc5A |
| Description: | Solution Structure of the SMRT Deacetylase Activation Domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [968-1220] |
1 11 21 31 41 51
| | | | | |
1 ASLDILGDVS IIAANAGKVA STRPISSKKI TLRGCSSANS LQHDGNNSEG CSYSFDFPRK 60
61 RTAGADVLAV GPLSPEQINS CLRTSVSSRE RCMDHLKFNH VVKKPRISHT LHNENSNTLH 120
121 NENSNEEDDS CSEESCGETG PIHWTDDERS AFIQGFSLFG KNFASISRYV GTRSPDQCKV 180
181 FFSKVRKCLG LESIKFGSGN VSTSVSVDNG NEGGGSDLED PCPMESNSGI VNNGVCAKMG 240
241 MNSPTSPFNM NQD
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 2iw5B |
| Description: | No description for 2iw5B was found. |
|
Region A: Residues: [1221-1313] |
1 11 21 31 41 51
| | | | | |
1 GVNQSGSANV KADLSRSEEE NGQKYLCLKD DNNLVNNAYV NGGFPSLVSE SCRDLVDINT 60
61 VESQSQAAGK SKSNDLMSME IDEGVLTSVT ISS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1314-1379] |
1 11 21 31 41 51
| | | | | |
1 EPLYCGLSVL SNVIVETPTE ISRKGSGDQG ATMPKFSSKN QDGVMQAANR TRNSGLEPES 60
61 APSGFR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1380-1571] |
1 11 21 31 41 51
| | | | | |
1 YPECLHHVPI EVCTENPIGV SAPRGNPNCH AESESGNSLV GQVDETHDLG WPKNNLELDG 60
61 RLQVLGHVNP EQIGLLKATN TESCQNPQRS VTQDLSRISR SKSDLIVKTQ RTGEGFSLTK 120
121 CTSSAPKPLA VSHKEGRSGH SRSHSFSLSD TERLHKNGDV KLFGTVLTTD ENGIKQKHNP 180
181 CGIVRSSSTL SR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1572-1677] |
1 11 21 31 41 51
| | | | | |
1 DHDTRHHYIN QQHLQNVPIT SYGFWDGNRI QTGLTSLPES AKLLASCPEA FSTHLKQQVG 60
61 NSKEILVDVN GGILSFGKHN EDRAESSSAK DEGNIGGVNG VAEAAT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
