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Protein Overview: AGD6_ARATH

General Information:
Name(s) found: AGD6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79314905|ref|NP_001030854.1| AGD6; ARF GTPase activator/ DNA binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|7629991|emb|CAB88333.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|75264634|sp|Q9M354.1|AGD6_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD6; AltName: Full=Protein ARF-GAP DOMAIN 6; Short=AtAGD6; AltName: Full=Protein ZIGA2 [NCBI NR]
  • gi|15231865|ref|NP_190939.1| AGD6; ARF GTPase activator/ DNA binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|134031918|gb|ABO45696.1| At3g53710 [Arabidopsis thaliana] [NCBI NR]
  • pir||T45911 hypothetical protein F5K20.10 - Arabidopsis thaliana [NCBI NR]
  • Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1 [Swiss-Prot]
  • (Q9M354) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11357815|pir||T45911 hypothetical protein F5K20.10 - Arabidopsis thalianagi|15231865|ref|NP_190939.1| ARF GAP-like zinc finger-containing protein ZIGA2 (ZIGA2) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 ARF GAP-like zinc finger-containing protein ZIGA2 (ZIGA2) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AGD6 | AGD6; DNA binding | chr3:19914708-19916397 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903730-19905419 REVERSE LENGTH=459 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 459 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS]
    cytosol [IDA]
    Biological Process: regulation of ARF GTPase activity [IEA]
    Molecular Function: DNA binding [ISS]
    zinc ion binding [IEA]
    ARF GTPase activator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT  60
   61 MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN SNAASVYRDR IQALAEGRPW 120
  121 NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE 180
  181 GAHVKSKSSE DIYTRSQLEA SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP 240
  241 PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV 300
  301 NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK 360
  361 AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT EAVAPKGSSA SNDDDGWTGW 420
  421 DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 42.0 No description for 2iqjA was found.
    2 View Details [126..235] deduced N/A No confident structure predictions are available.
    3 View Details [236..459] MSA 5.257997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle