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Protein Overview: PTA16_ARATH

General Information:
Name(s) found: PTA16_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Protein plastid transcriptionally active 16, chloroplastic OS=Arabidopsis thaliana GN=PTAC16 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 510 amino acids

    Gene Ontology:
    Cellular Component: nucleoid [IDA]
    plastid chromosome [IDA]
    chloroplast [IDA]
    membrane [IDA]
    chloroplast envelope [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: metabolic process [IEA]
    Molecular Function: catalytic activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD  60
   61 FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT GQAGIRIAQT LLQRGFSVRA 120
  121 GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE 180
  181 NGPDAQVSTS DALLVVQAAE LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL 240
  241 TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK 300
  301 IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE 360
  361 EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA QQKADAVGVT VDGLFNKAKD 420
  421 ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP 480
  481 KEERPKKPEK EVRKVFGGLF KQETIYIDDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 21.154902 No description for 2et6A was found.
    2 View Details [92..409] PSI-BLAST 59.221849 dTDP-glucose 4,6-dehydratase (RmlB)
    3 View Details [410..510] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.26736023026862 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.68812524232244 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle