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Protein Overview: UBP16_ARATH

General Information:
Name(s) found: UBP16_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75265551|sp|Q9SB51.1|UBP16_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 16; AltName: Full=Ubiquitin thioesterase 16; AltName: Full=Ubiquitin-specific-processing protease 16; AltName: Full=Deubiquitinating enzyme 16; Short=AtUBP16 [NCBI NR]
  • pir||T05578 hypothetical protein F22K18.240 - Arabidopsis thaliana [NCBI NR]
  • gi|7269306|emb|CAB79366.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4220534|emb|CAA23007.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18416380|ref|NP_567705.1| UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=1 SV=1 [Swiss-Prot]
  • (Q9SB51) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|4220534|emb|CAA23007.1| putative protein [Arabidopsis thaliana]gi|7485969|pir||T05578 hypothetical protein F22K18.240 - Arabidopsis thalianagi|18416380|ref|NP_567705.1| ubiquitin-specific protease 16, putative [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin-specific protease 16 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: UBP16 | UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin-specific protease | chr4:12679503-12684538 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); cysteine-type endopeptidase/ ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: UBP16 | ubiquitin-specific protease 16 | chr4:12679493-12684528 REVERSE LENGTH=1008 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1008 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: cell proliferation [IGI]
    root development [IGI]
    flower development [IGI]
    shoot development [IGI]
    leaf development [IGI]
    Molecular Function: ubiquitin-specific protease activity [ISS]
    zinc ion binding [IEA]
    ubiquitin thiolesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS  60
   61 VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI IHWRQGHKDE CHPASIVYDS 120
  121 EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL 180
  181 IDKEEAVSVA ETSGSSFSGF SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED 240
  241 TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR 300
  301 HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS 360
  361 EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI SSSTDALSPL DSSNLSHVTL 420
  421 PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA 480
  481 VVQHINSLHG RSGLKASVLK VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ 540
  541 PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE 600
  601 KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT 660
  661 TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD ISTLDDALRR FTRTEILDGE 720
  721 NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG 780
  781 GSEKSHDYKL YGVIVHLDVM NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY 840
  841 MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR 900
  901 SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR 960
  961 AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH QLPLGGER

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] PSI-BLAST 12.69897 No description for 2oddA was found.
    2 View Details [130..219] deduced N/A No confident structure predictions are available.
    3 View Details [220..279] deduced N/A No confident structure predictions are available.
    4 View Details [280..426] deduced N/A No confident structure predictions are available.
    5 View Details [427..538] deduced N/A No confident structure predictions are available.
    6 View Details [539..847] PSI-BLAST 76.522879 No description for 2gfoA was found.
    7 View Details [848..1008] MSA 6.581997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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