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Protein Overview: gi|17979349, gi|...

General Information:
Name(s) found: gi|7630061 [NCBI NR]
gi|17979349 [NCBI NR]
gi|15231102 [NCBI NR]
gi|11358144 [NCBI NR]
Description(s) found:
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  • gi|7630061|emb|CAB88283.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17979349|gb|AAL49900.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15231102|ref|NP_191425.1| 60S ribosomal protein-related [Arabidopsis thaliana] [NCBI NR]
  • pir||T49149 hypothetical protein T20N10.10 - Arabidopsis thaliana [NCBI NR]
  • (Q9LXT5) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|7630061|emb|CAB88283.1| putative protein [Arabidopsis thaliana]gi|11358144|pir||T49149 hypothetical protein T20N10.10 - Arabidopsis thalianagi|15231102|ref|NP_191425.1| 60S ribosomal protein-related [Arabidopsis [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 60S ribosomal protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 60S ribosomal protein-related | chr3:21712551-21713891 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At3g58660 OS=Arabidopsis thaliana GN=T20N10_10 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    nucleolus [IDA]
    Biological Process: RNA processing [IEA]
    translation [IEA]
    Molecular Function: RNA binding [IEA]
    structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTAVSPPPP QEQQLVHASQ TSRVSPKTVE SALNGLINWR SDKSKTEKPQ LLEEDELVYL  60
   61 FVTLKKIPQK TRTNAYRIPL PHPLINPTVD SPEICLIIDD RPKSGLTKDD AMKKIKSENI 120
  121 PITKVIKLSK LKSDYKAFEA KRKLCDSYDM FFTDRRIIPL LPRVIGKKFF TSKKIPVALD 180
  181 LKHRNWKHQI EKACGSAMFF IRTGTCSVIK VGKLSMDICE ITENVMATLN GLVEFLPNKW 240
  241 TYVRSLHLKL SESLALPIYQ SVPDLKLKID AFGSGKSVVQ EEKEGEVEEV VAVDGGEKSV 300
  301 TGKGKKKKGR IHEVRYMDSN VAEVLDEDEI GGDEDNNEIV ESEEKKMKKR KKEVSEVAES 360
  361 EKPMKKAAKG KLKPDVEKPM KKAAKGKSKP DVEKPMQKAA VKGKVKPDVV KLEKSKDGLK 420
  421 AKKTTMVAKD ESGGGLKPKR KSVLRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..270] PSI-BLAST 45.30103 70S ribosome functional complex
    2 View Details [271..446] MSA 5.130997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle