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Protein Overview: gi|6730725, gi|3...

General Information:
Name(s) found: gi|6730725 [NCBI NR]
gi|30699526 [NCBI NR]
gi|25406679 [NCBI NR]
Description(s) found:
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  • gi|6730725|gb|AAF27115.1|AC018849_3 unknown protein; 13226-11448 [Arabidopsis thaliana] [NCBI NR]
  • gi|30699526|ref|NP_849914.1| ribosomal protein S15 family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||D96838 unknown protein T21F11.5 [imported] - Arabidopsis thaliana [NCBI NR]
  • (Q9M8M9) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unknown protein T21F11.5 [imported] - Arabidopsis thalianagi|6730725|gb|AAF27115.1| unknown protein; 13226-11448 [Arabidopsis thaliana]gi|30699526|ref|NP_849914.1| ribosomal protein S15 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosomal protein S15 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribosomal protein S15 family protein | chr1:30310296-30312074 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein; 13226-11448 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | S15/NS1, RNA-binding protein | chr1:30305404-30307182 FORWARD LENGTH=414 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein T21F11.5 OS=Arabidopsis thaliana GN=T21F11.5 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    small ribosomal subunit [ISS]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: translation [IEA][ISS]
    Molecular Function: structural constituent of ribosome [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALHLARPKQ RLHSNPSLIH LFSTSSSSSS SSPQDGNESN EQPSQSSSDY KISSYFSGIR  60
   61 SSLKQTQSQD GKRQFVRFDA KPQNSLSGNQ DIRRNLNEFR SRATAPPPRD MQDLFKQNVL 120
  121 SKSGGTRRIE GVPLTNIKAN LRQMRPQQAT TESKWANLSG IQNIMKTNIN DNIRSNVIGG 180
  181 AAEGLPHSVV GKELEEEDVT EEEMKSEFIK SYDPIELGEK LRLYRPEGKK EEGWFSLQEL 240
  241 NQRLVKLRAM EEEQFQKTSI VHPSFVNNLR SEFHKFTKAQ KSDPFQNTNI WGVLSGTPKY 300
  301 MLEPPKDQLV ETYFHPDNMS SAEKMKIELA KVREEFKMSE SDCGSARVQV AQLTTKIKHL 360
  361 SSVLHKKDKH SRKGLIAMVQ RRKKLLKYMR RTDWDSYCLS LSKLGLRDNP DYKF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..179] MSA 16.141997 View MSA. No confident structure predictions are available.
    2 View Details [180..302] deduced N/A No confident structure predictions are available.
    3 View Details [303..414] PSI-BLAST 39.522879 RIBOSOMAL PROTEIN S15 FROM BACILLUS STEAROTHERMOPHILUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • structural constituent of ribosome
    		•  10.0789865019321 bayes_pls_golite062009
  • structural molecule activity
    		•  9.50403295759084 bayes_pls_golite062009
  • RNA binding
    		•  1.51065002653781 bayes_pls_golite062009
  • binding
    		•  1.25122902411457 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.735202277664352 bayes_pls_golite062009
  • protein binding
    		•  0.599295362610273 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle