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Protein Overview: PP378_ARATH

General Information:
Name(s) found: PP378_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g13270, chloroplastic; Flags: Precursor [NCBI NR]
  • gi|15240591|ref|NP_196831.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T48574 hypothetical protein T31B5.90 - Arabidopsis thaliana [NCBI NR]
  • Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1 [Swiss-Prot]
  • (Q9LYU9) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11281369|pir||T48574 hypothetical protein T31B5.90 - Arabidopsis thalianagi|15240591|ref|NP_196831.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pentatricopeptide (PPR) repeat-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:4246957-4249215 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RARE1 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4246954-4249212 REVERSE LENGTH=752 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 752 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA modification [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILTVQSSF SSSRVPVIKN ANFDQIPSWV SLKSSTSSPS VKISHKQGQV ENLHLVSLSK  60
   61 HRKLNEAFEF LQEMDKAGVS VSSYSYQCLF EACRELRSLS HGRLLHDRMR MGIENPSVLL 120
  121 QNCVLQMYCE CRSLEDADKL FDEMSELNAV SRTTMISAYA EQGILDKAVG LFSGMLASGD 180
  181 KPPSSMYTTL LKSLVNPRAL DFGRQIHAHV IRAGLCSNTS IETGIVNMYV KCGWLVGAKR 240
  241 VFDQMAVKKP VACTGLMVGY TQAGRARDAL KLFVDLVTEG VEWDSFVFSV VLKACASLEE 300
  301 LNLGKQIHAC VAKLGLESEV SVGTPLVDFY IKCSSFESAC RAFQEIREPN DVSWSAIISG 360
  361 YCQMSQFEEA VKTFKSLRSK NASILNSFTY TSIFQACSVL ADCNIGGQVH ADAIKRSLIG 420
  421 SQYGESALIT MYSKCGCLDD ANEVFESMDN PDIVAWTAFI SGHAYYGNAS EALRLFEKMV 480
  481 SCGMKPNSVT FIAVLTACSH AGLVEQGKHC LDTMLRKYNV APTIDHYDCM IDIYARSGLL 540
  541 DEALKFMKNM PFEPDAMSWK CFLSGCWTHK NLELGEIAGE ELRQLDPEDT AGYVLPFNLY 600
  601 TWAGKWEEAA EMMKLMNERM LKKELSCSWI QEKGKIHRFI VGDKHHPQTQ EIYEKLKEFD 660
  661 GFMEGDMFQC NMTERREQLL DHSERLAIAF GLISVHGNAP APIKVFKNLR ACPDCHEFAK 720
  721 HVSLVTGHEI VIRDSRRFHH FKEGKCSCND YW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..617] PSI-BLAST 9.30103 Clathrin D6 Coat
    2 View Details [618..752] PSI-BLAST 3.522879 PP5 structure

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle