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Protein Overview: gi|15231966, gi|...

General Information:
Name(s) found: gi|15231966 [NCBI NR]
gi|12322744 [NCBI NR]
Description(s) found:
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  • gi|15231966|ref|NP_187491.1| VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12322744|gb|AAG51368.1|AC012562_29 hypothetical protein; 78804-81924 [Arabidopsis thaliana] [NCBI NR]
  • (Q9C9Y1) Hypothetical protein [athaliana3702.FASTAC.txt]
  • hypothetical protein; 78804-81924 [Arabidopsis thaliana]gi|15231966|ref|NP_187491.1| VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 VHS domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | VHS domain-containing protein / GAT domain-containing protein | chr3:2667887-2671007 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein; 78804-81924 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ENTH/VHS/GAT family protein | chr3:2667881-2671001 FORWARD LENGTH=607 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • ENTH/VHS/GAT family protein OS=Arabidopsis thaliana GN=F17O14.26 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 607 amino acids

    Gene Ontology:
    Cellular Component: Golgi stack [ISS]
    intracellular [IEA]
    Biological Process: intra-Golgi vesicle-mediated transport [ISS]
    intracellular protein transport [IEA][ISS]
    Molecular Function: protein transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHPLVDRAT SDMLIGPDWA MNLEICDMLN HEPGQTREVV SGIKKRLTSR TSKVQLLALT  60
   61 LLETIITNCG ELIHMQVAEK DILHKMVKMA KRKPNIQVKE KILILIDTWQ ESFSGPQGRH 120
  121 PQYYAAYQEL LRAGIVFPQR PQITPSSGQN GPSTRYPQNS RNARQEAIDT STESEFPTLS 180
  181 LTEIQNARGI MDVLAEMMNA IDGNNKEGLK QEVVVDLVSQ CRTYKQRVVH LVNSTSDESM 240
  241 LCQGLALNDD LQRLLAKHEA IASGNSMIKK EEKSKKEVPK DTTQIIDVGS SETKNGSVVA 300
  301 YTTNGPKIDL LSGDDFETPN ADNSLALVPL GPPQPSSPVA KPDNSIVLID MLSDNNCESS 360
  361 TPTSNPHANH QKVQQNYSNG FGPGHQEQSY YGQGSSAPVW NLQITQQPSS PAYGNQPFSP 420
  421 NFSPPASPHY GGQNNNVLAL PPPPWEAQSP SSSPQYSPTH PMQVTQVVIT THTHQPLGYN 480
  481 PQGGSPHATN NNNNNMFGMF LPPMTGGHMP PPFGHNGHVT NNNYNPNMYG GYGGQAQPPQ 540
  541 QYLVEQQMYG MSLQDNGNNN TNPYQVSSHQ PPPMMKPMNK KPEDKLFGDL VELSKFKKPT 600
  601 SGRAGSM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] PSI-BLAST 54.09691 Tom1 protein
    2 View Details [140..318] PSI-BLAST 20.30103 Crystal structure of Tom1 GAT domain in complex with ubiquitin
    3 View Details [319..481] PSI-BLAST 3.09691 Sec24
    4 View Details [482..607] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.229007340928547 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle