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Protein Overview: VIP5_ARATH

General Information:
Name(s) found: VIP5_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Protein RTF1 homolog OS=Arabidopsis thaliana GN=VIP5 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 643 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: positive regulation of transcription, DNA-dependent [IMP]
    negative regulation of flower development [IMP]
    Molecular Function: DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDLENLLLE AAGRTNSAGR SRHPPSSRRR EGSYSDGSSD SRDDSDEDRG YASRKPSGSQ  60
   61 VPLKKRLEAE REDRAARVEG GYGDGPSDRE GDSSEESDFG DDLYKNEEDR QKLAGMTEFQ 120
  121 REMILSERAD KKGDKNFTEK LRSKRESEKT PVSKKETQPL PASRGVRSSA RSADRAAAKD 180
  181 DALNELRAKR MKQQDPAALR KLRDASKGGS GSRDFSSTKR KPLASSNLSS SSQSDSDSRS 240
  241 QSDDEGSNGG MLDSDDDRSD VPTFEDVKEV TIRRSKLAKW LMEPFFEELI VGCFVRVGIG 300
  301 RSKSGPIYRL CWVKNVDATD PDKTYKLENK TTHKYLNVVW GNETSAARWQ MAMISDGHPL 360
  361 EEEYRQWIRE VERTNGRMPT KQDISEKKEA IQRTNSFVYS AETVKQMLQE KKSASVRPMN 420
  421 VAAEKDRLRK ELEIAQSKND EAGVERIKSK IKQLDASRNK KGVDKKALKL AEMNKKNRAE 480
  481 NFKNASEVKS ITASLKAGEA GYDPFSRRWT RSSNYYNGKN KGKDGEENEA AVAAAVETNG 540
  541 ADAGAGVEAT EAALEAAAEA GKLIDTRAPI GQGAEHNQLH NFELSLSLTA LQKYGGPQGV 600
  601 QKAFMARKQL TEATVGCRVA ENDGKRHGLT LTVSDYKRRR GLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..259] PSI-BLAST 6.69897 Heavy meromyosin subfragment
    2 View Details [260..395] PSI-BLAST 49.39794 No description for 2bzeA was found.
    3 View Details [396..643] MSA 1.05798 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle